Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P18
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                     134   6e-32
SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7)                34   0.11 
SB_55276| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_26082| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)                  29   5.6  
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)                29   5.6  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     29   5.6  
SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)                   29   5.6  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   28   9.8  

>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score =  134 bits (325), Expect = 6e-32
 Identities = 81/175 (46%), Positives = 95/175 (54%), Gaps = 29/175 (16%)
 Frame = +2

Query: 344 FSGYSGSLFSKDPYDKDDAEADAIYESIDXXXXXXXXXXXXXXXXXXXXXXXQERPKIQQ 523
           FSGY GSLFS  PYDKDD EAD+IYESID                       QERPKIQQ
Sbjct: 68  FSGYGGSLFSSGPYDKDDEEADSIYESIDKRMDDRRKERREQKLKEEMERYRQERPKIQQ 127

Query: 524 QFSDLKRELKTVSEDEWAAIPEVGDARNRKQRNPRAE----------------------- 634
           QFSDLKR+L  VSED+W  IP+VGD R +KQRNPR E                       
Sbjct: 128 QFSDLKRKLNEVSEDDWVNIPDVGDYRTKKQRNPRTENILQERHKEKLKKSIEDMAFFRS 187

Query: 635 -KFTPLPDSVL-SRNLGGESSSSIDPG----SGLXSMMPGVVTPGMLTPSGDLDL 781
            +FTP+PDSV+ S  L G + +++        G  +  PG +TPG  TPS DLDL
Sbjct: 188 HRFTPVPDSVINSALLAGGTENALSGRQQVLGGFQTPFPGAMTPGYATPSADLDL 242


>SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7)
          Length = 626

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 539 KRELKTVSEDEWAAIPEVGDA-RNRKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPGSG 715
           +   KT+S  EW   P +G   R   ++    +  T   D V    L   S  ++ PG+G
Sbjct: 86  RSSFKTLSPGEWYTEPPLGSCHRGNGKQKLLQDPVTAGMDPVTGGMLNRSSFKTLSPGNG 145

Query: 716 LXSMMPGVVTPGML 757
           +  ++   VT GM+
Sbjct: 146 IQKLLQDPVTGGMV 159


>SB_55276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 596 DARNRKQRNPRAEKFTPLPDSVLSR--NLGGESSSSIDPG 709
           D++ RK+R PR  +F PL D   SR  N G    S +  G
Sbjct: 240 DSKTRKERGPRKSRFEPLDDYGDSRDPNQGSRERSELREG 279


>SB_26082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 348 QDIVDLCFLRILMTKTMQRQMQSMSPLT-RGWMRRGRSIEKKDLKKTWKDIDRRGQKFNS 524
           +DI +    R     T + + ++   +T RG  R  R I ++ +K+T++DI  RG+K   
Sbjct: 48  RDITERGVKRTYRDITERGEKRTYRDITERGVKRTYRDITERGVKRTYRDITERGEKRTY 107

Query: 525 NSLT 536
             +T
Sbjct: 108 RDIT 111



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 432 RGWMRRGRSIEKKDLKKTWKDIDRRGQKFNSNSLT 536
           RG  R  R I ++ +K+T++DI  RG+K     +T
Sbjct: 41  RGEKRTYRDITERGVKRTYRDITERGEKRTYRDIT 75


>SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 732 GIIDXSPDPGSIEDDDSPPKFLDKTLSGNGVNFSARGLRCFLLRASPT 589
           G +   P   S  +++S P+  D+TL G G+   A+  R   LR  PT
Sbjct: 364 GAVGIDPPRVSTREENSRPRVEDQTLRGKGIG-KAKDARVTHLRRLPT 410


>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
          Length = 310

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 593 GDARNRKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPGS----GLXSMMPGVV 742
           G  R R +RN R+ +F P   + LSR+   +  S++ P +     L S  PGVV
Sbjct: 97  GTGRERNERNARSHRFCPRMQTALSRD--DKPVSTVPPDTPIQKWLYSENPGVV 148


>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
          Length = 299

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 465 KKDLKKTWKDIDRRGQK 515
           KK LK+ WK+ID +G+K
Sbjct: 258 KKKLKRKWKEIDEKGKK 274


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 503 ERPKIQQQFSDLKRELKTVSEDEWAAIPEVGDARNRKQR 619
           +R K++Q    LKR+L+    +  AA P+V DA N  Q+
Sbjct: 842 KRLKVEQDPQQLKRQLEKCDAELLAADPKVIDATNHGQQ 880


>SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)
          Length = 357

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 351 DIVDLCFLRILMTKTMQRQMQSMSPLTRGWMRRGRSI---EKKDLKKTWKDIDRRGQ--K 515
           DI+ LCF  I   +T +R      P T   +     +    K D++KT +D DRRG+  K
Sbjct: 77  DIILLCF-DISNRQTFERIESKWLPETTQVLPGSIRVLIGNKNDIRKTRQDKDRRGKVLK 135

Query: 516 FNSNSL 533
            +SNS+
Sbjct: 136 MSSNSV 141


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 774 RSPDGVNIPGVTTPGIIDXSPDPGSIEDDDSPPKFLDKTLSGNGVNFS 631
           RSP    IP   +PG       P  IE    PP F D +  G+G+ FS
Sbjct: 142 RSPVSPGIP--RSPGFPKSPRSPDGIEP---PPGFRDNSQGGDGLGFS 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,858,522
Number of Sequences: 59808
Number of extensions: 391616
Number of successful extensions: 1352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)