Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P18
(782 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 24 1.8
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 23 3.2
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 23 3.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.4
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 493 SFQVFFKSFFSILLPLLIHPLVNGLIDCI 407
S V F + S LP+L+ V G I C+
Sbjct: 196 SSYVIFSAMGSFFLPMLVMLYVYGRISCV 224
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 23.0 bits (47), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 417 MSPLTRGWMRRGRSIEKKDLKKTWKDIDRRGQKFN 521
+SP+TRG +RRG ++ L W + G+K N
Sbjct: 264 ISPVTRGLVRRG-ILQSGTLNAPWSYMS--GEKAN 295
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 23.0 bits (47), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 417 MSPLTRGWMRRGRSIEKKDLKKTWKDIDRRGQKFN 521
+SP+TRG +RRG ++ L W + G+K N
Sbjct: 264 ISPVTRGLVRRG-ILQSGTLNAPWSYMS--GEKAN 295
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 140 DLVLSSETGGDLSDFITNGEWYLIGMPG 167
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 140 DLVLSSETGGDLSDFITNGEWYLIGMPG 167
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 140 DLVLSSETGGDLSDFITNGEWYLIGMPG 167
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 140 DLVLSSETGGDLSDFITNGEWYLIGMPG 167
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 140 DLVLSSETGGDLSDFITNGEWYLIGMPG 167
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 140 DLVLSSETGGDLSDFITNGEWYLIGMPG 167
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 208 DLVLSSETGGDLSDFITNGEWYLIGMPG 235
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 653 DSVLSRNLGGESSSSIDPGSGLXSMMPG 736
D VLS GG+ S I G MPG
Sbjct: 208 DLVLSSETGGDLSDFITNGEWYLIGMPG 235
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,673
Number of Sequences: 438
Number of extensions: 3420
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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