Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P12
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 31 0.65
01_05_0170 - 18888849-18889880 31 1.1
03_06_0422 + 33818887-33819996 29 2.6
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 29 4.6
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 4.6
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 8.0
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 28 8.0
10_01_0039 + 447573-448911,451247-451296,451322-451423 28 8.0
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455 28 8.0
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 8.0
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 219 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 362
+P + + T+T P L R+W + E+VLEQ S + MP PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>01_05_0170 - 18888849-18889880
Length = 343
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 55 PYKNKMLSAARLIAPDSQVCHLLQLCTGATTC-SCTHPYTDGTCCPYTALCS 207
PY ++ S R++ + H ++ +C SCT Y C + ALCS
Sbjct: 236 PYHHEWFSLYRMVKQEEIPVHDIKNAIVVQSCDSCTRTYMIPASCDFAALCS 287
>03_06_0422 + 33818887-33819996
Length = 369
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -1
Query: 463 ESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 293
E ++ER + E+T L + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -1
Query: 319 CSNTSSGTSYSHCRCT---STNEF--GSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGY 155
C N ++G Y C C+ S N + G +N+ EGP SR + GGY
Sbjct: 261 CVNATNGKGYL-CNCSAGYSGNPYVTGGCININECELRREGPAMYPCYSGSRCYDTEGGY 319
Query: 154 SCK 146
CK
Sbjct: 320 KCK 322
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -1
Query: 511 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDE 332
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 331 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 242
GAE S+ + T+ + T T+ G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 472 NSLESEEQQERHHKTEQTHGLRQ 404
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 634 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 497
N I V A+C+ +S H GE++K I P ++ DSI +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 155 QLQVVAPVQSCRRWQTWLSGA 93
Q AP S RRW +WL+ A
Sbjct: 476 QCSTAAPASSTRRWTSWLAAA 496
>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
Length = 300
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 212 TALQRAV*GQQVPSVYGWVQLQVVAPVQSCRRWQTWLSGAISL 84
T+LQR + + GW+ V P Q RRW G + +
Sbjct: 25 TSLQRGEIQEATSQLVGWLGQPRVRPNQCQRRWMQGFEGTVEI 67
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -3
Query: 230 PMWSGRTALQRAV*GQQVPSVYGWVQLQVVAPVQS---CRRW 114
P+W G ++ AV G + P+ +G+ + ++ P Q+ CR W
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAW 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,758
Number of Sequences: 37544
Number of extensions: 445420
Number of successful extensions: 1512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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