Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P12
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   4e-18
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.88 
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               31   0.88 
SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)              31   1.2  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        30   1.5  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         30   1.5  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   2.7  
SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07)         29   2.7  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       29   2.7  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   3.6  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   3.6  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    29   4.7  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   6.2  
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       28   8.2  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          28   8.2  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
 Frame = +2

Query: 128 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 304
           +A +RP +       +VPA P   + A R FQT+S  +D+DSAAKF              
Sbjct: 61  TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119

Query: 305 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 412
                 FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = -1

Query: 331 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYS 152
           G  D    + G+    CR        ++  +  + C      C +LCRD+      GGY 
Sbjct: 278 GCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTD-----GGYY 332

Query: 151 CKWSHQCRVAEDGRPGCQGRSV 86
           C+     +V  DG   C G +V
Sbjct: 333 CECHKGYQVGPDGM-SCIGNAV 353


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 262 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLC-MGGYSC 149
           E   R NVLSD  GLE   CR  LC +  +  C  GG  C
Sbjct: 76  EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSGGLRC 115


>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
          Length = 479

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 104 ARSAIFCNSALVRPLAAVPTHTQMVPAVPTQLSAVRSF 217
           +R  ++CN+ L R   +VP  T +VP   T L  V S+
Sbjct: 436 SREQVYCNNGLKRDGVSVPAFTTLVPEPRTSLYLVASW 473


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -1

Query: 394  QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 233
            QNG + E++L++  G + G  +       ++T    S T + H  CT  ++     + L 
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787

Query: 232  DRCGLEGPHCRELCRDS 182
              C  +  +CR +C D+
Sbjct: 1788 INCPKKCKYCRPVCEDT 1804


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -1

Query: 394 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 233
           QNG + E++L++  G + G  +       ++T    S T + H  CT  ++     + L 
Sbjct: 52  QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111

Query: 232 DRCGLEGPHCRELCRDS 182
             C  +  +CR +C D+
Sbjct: 112 INCPKKCKYCRPVCEDT 128


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 463 ESEEQQERHHKTEQTHGLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 323
           +  + QER  +TEQTHG      QG+ Q    +Q  ++G   G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 145 TCSCTHPYTDGTCCPYTALC---SAVLPDHIGH*GH*LCCQIHWCWCSDSGSS 294
           TC C   YT  TC    + C   S V  + +G+ GH   C+   CW   SG+S
Sbjct: 330 TCECFSGYTGPTCAVVESACKPTSCVNGECVGN-GHNSSCK---CWKGYSGAS 378


>SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07)
          Length = 413

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 79  AARLIAPDSQVCHLLQLCTGATTCSCTHPYTDGT 180
           AAR I   SQ C L + C G    +C HP  D +
Sbjct: 326 AARSIMQASQFCSLPEHCHGPGNKACVHPSLDNS 359


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
 Frame = -1

Query: 352 PGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRC----------GLEGPH 206
           PG      ++ C  +  G + +H C CT+    G+R N ++ +C          G  GP 
Sbjct: 346 PGWTGPFCSKPCPPSLWGHNCAHPCNCTN----GARCNAVTGQCACTDGCSCNAGWTGPE 401

Query: 205 CRELC-RDSRYHLCMGGYSCKWSHQCRVAEDGRPGC 101
           CR+ C  DS    C     C  + +C  A  GR  C
Sbjct: 402 CRDPCGLDSWGPGCTNTCQCSRNGECDAA-SGRCAC 436



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
 Frame = -1

Query: 289 SHCRCT-STNEFGSRVNVLSDRC----GLEGPHCRELCRDSRY-HLCMGGYSCKWSHQCR 128
           S CRC  S  +     + ++ +C    G  GP C E C + RY   C     C     CR
Sbjct: 737 SSCRCDPSKTDVKKPCDHVTGQCNCRPGYRGPRCLEQCPEGRYGDQCARKCECDNRVPCR 796

Query: 127 VAEDG----RPGCQGRS 89
            A DG     PG  G S
Sbjct: 797 -ATDGVCLCLPGYYGNS 812


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 493 VVVFLKVNSLESEEQQERHHKTEQTHGLRQGETQNG 386
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -1

Query: 478 KVNSLESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 302
           K++ L+  E Q   H + +   L     +N V    + +G       +EGAE     SS 
Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258

Query: 301 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 194
             GT+ +      +++  +  N LS++C +   HC EL
Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132 HWCDHLQLYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 245
           HW + +    PI RW+ L   H+SL   P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 223 GLEGPHCRELCRDSRYHLCMGGYSCKWSHQCRVAEDG 113
           G + P   E CR   +  C     C+++HQC   E+G
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFP-GCRYTHQCAYCENG 400


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 202 RELCRDSRYHLCMGGYSCKWSHQCR 128
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
 Frame = +1

Query: 286 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 366
           G +WF SW W  +   LPH+     + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 280 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 176
           R T T +FG +VN+ S    LEG   R+   D+ +
Sbjct: 16  RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
 Frame = -1

Query: 463 ESEEQQERH-HKTEQTHGLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 293
           ES   Q  H H +   HG  Q +  NG  V ++L  +G    + D     +C+  S+   
Sbjct: 23  ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQELRCDGDYACV-DHSDERNCACRSAEFK 80

Query: 292 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYSCKWSHQCRVAEDG 113
               +C   ++F +  +  +D  G +   C   C  S  H C  G    WS  C    D 
Sbjct: 81  CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136

Query: 112 RPG 104
           + G
Sbjct: 137 QDG 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,033,420
Number of Sequences: 59808
Number of extensions: 535668
Number of successful extensions: 1946
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)