Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P10
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 38 0.001
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.007
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 32 0.089
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 31 0.16
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 30 0.48
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 29 0.83
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 1.1
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 28 1.9
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 28 1.9
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 28 1.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 2.5
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 27 3.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.4
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 27 3.4
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 3.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 3.4
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 4.4
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 4.4
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 5.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.9
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 5.9
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 5.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 7.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 7.8
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.8
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 7.8
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 38.3 bits (85), Expect = 0.001
Identities = 31/149 (20%), Positives = 68/149 (45%)
Frame = +2
Query: 305 FGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEEKRDYAER 484
F E+++ + + + + ++++N S SSS ++ ++ + + S D +DY +
Sbjct: 91 FEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSNMQSSPSKDPFVSQDYEKE 150
Query: 485 KYNDYGSQVKKSLDKIEQDQINQRLDFESRLRQTNMETKVSRYSKFTKKPNIEPRNVFSP 664
+ K S ++ Q N R + + T+ + S S P+++P N SP
Sbjct: 151 SISSSQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASNASSSSSVVSSPSLKPNNT-SP 209
Query: 665 PKVKSNKNADVYTDPIFNIRITKPLLSSS 751
K+ +D +T N ++T+ + S+S
Sbjct: 210 LKLFQGA-SDPFTREHLN-QLTQDVKSNS 236
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.9 bits (79), Expect = 0.007
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Frame = +2
Query: 251 KMDEKDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLR---SEMPSSSTAEVPS 421
K++EK E S S+ +E ++ + +E ++ ++T + SE S S + S
Sbjct: 155 KIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDS 214
Query: 422 IVHNGDTDSSDDEE----KRDYAERKYNDYGSQVKKSLDKIEQDQINQRLDFESRL 577
+GD+DSS D E D +RK + + K QD F RL
Sbjct: 215 SSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRL 270
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 32.3 bits (70), Expect = 0.089
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +2
Query: 257 DEKDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTN-LRSEMPSSSTAEVPSIVHN 433
+ DE E ++ + +++E + N ++ +T N L S + E H+
Sbjct: 239 ERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSKGLQIETQPASHD 298
Query: 434 GDTDSSDDEEKRDYAERKYNDYGSQVKKSLDKIEQDQINQRLD 562
G+ D EE+ + N SQ SL+ +D+ N+++D
Sbjct: 299 GEVDGEVKEEEENKVSSSSNIEASQ--SSLE--VKDEANRKVD 337
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 31.5 bits (68), Expect = 0.16
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Frame = +2
Query: 266 DELSQLEELLSADFGENTEMNAQNNTKEV--DIFQQTTNLRSEMPSSSTAEVP-----SI 424
D + LEE +D GE E +NN + D+ ++ T + +E + +V SI
Sbjct: 409 DSEANLEE--KSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSI 466
Query: 425 VHNGD---TDSSDDEEKRDYAERKYNDYGSQVKKSLDKIEQDQINQRLDFESRLRQTNME 595
N TDS + E+K + E K D ++ S++ ++++ + ++ QT+ +
Sbjct: 467 EANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSK 526
Query: 596 TKVSRYSK-FTKKPNIEPRNVFSPP-KVKSNKNADV 697
+ +K K+ N + V S K K + AD+
Sbjct: 527 DTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAADL 562
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 29.9 bits (64), Expect = 0.48
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Frame = +2
Query: 311 ENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEEKRDYAERKY 490
+ + +N+Q + + + + S +PSS + E NG S+++ + + A R
Sbjct: 500 DQSSLNSQQLSNQAKAQGEVSPTLSFVPSSHSMEQG----NGSVASANNAQS-EAATRSI 554
Query: 491 NDYG--SQVKKSLDKIEQDQINQRLDFESRLRQTNMETKVSRYSKFTKKPNIE 643
N S+V+ ++ +++R + R+ +ET V +YS+ +K+ +E
Sbjct: 555 NSISEVSEVRFP-EQSSVKTVDERKSLDGRITSVTLETLVEKYSELSKQQIVE 606
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 29.1 bits (62), Expect = 0.83
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 314 NTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEEKRDYAERKYN 493
N+ +N+QN EV +++ ++ + PSS S +N +SS + DY R YN
Sbjct: 259 NSALNSQNEHTEVQ--KKSNSIDNLTPSSELFRKRSRDNNLSRESSVSSKHLDYNSRNYN 316
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +2
Query: 431 NGDTDSSDDEEKRDYAERKYNDYGSQVKKSLDKIEQDQINQRLDFESRLRQTNMETKVSR 610
+GD+D E K+D ++K ND S KS ++D+ + + F S +T++
Sbjct: 694 SGDSDKEHKEHKKD-KQKKKNDQISSSSKSASSFKKDRDKESI-FGSLFGSKKKQTEIPP 751
Query: 611 YSKFTKKPNIEPRNVFSPPKVK 676
S P + +PPK K
Sbjct: 752 VSS-------SPPHNDAPPKAK 766
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.9
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Frame = +2
Query: 290 LLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSI----------VHNGD 439
L A F + +++NAQ + I + + + + S + +V I V + +
Sbjct: 332 LEEAGFEDESQLNAQVKNVQAKIRRAQRDQQRQEESEGSLDVTEIDVEQAFPLLNVPDAE 391
Query: 440 TDSSDDEEKRDYAERKYNDYGSQVKKSLDK-IEQDQINQRLDFESRLRQTNMETKVS 607
D + +KR K N Y ++V+ +K IE+ +R + + RLR N T V+
Sbjct: 392 LDEAGLRQKRHQRLMKAN-YDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWVN 447
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/96 (20%), Positives = 42/96 (43%)
Frame = +2
Query: 311 ENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEEKRDYAERKY 490
ENT + Q +K + + +TN +P + S V + D D ++ A+R +
Sbjct: 22 ENTLVGKQALSKGTEKTKLSTNFEINLPRRTVLSDVSNVGKNNADEKDTKK----AKRSF 77
Query: 491 NDYGSQVKKSLDKIEQDQINQRLDFESRLRQTNMET 598
++ + DK + + ++L S+ ++ET
Sbjct: 78 DESNLSTNEEADKPVESKFVKKLKVYSKNADPSVET 113
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +2
Query: 251 KMDEKDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVH 430
K +LS +E +SA + E+N+ ++ + ++ S SSS ++ +
Sbjct: 225 KQISASDLSLHQEFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDL-- 282
Query: 431 NGDTDSSDDEEKRDYAERKYND 496
+ +DSS +E D A + +D
Sbjct: 283 SSTSDSSSGDESSDTARQSSSD 304
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 1.9
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Frame = +2
Query: 266 DELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLR--SEMPSSSTAEVPSIVHNGD 439
+ LS LE ++ + + A+ + E D+ + T + S++ S+ ++ SI +
Sbjct: 902 ERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQ 961
Query: 440 TDSSDDEE-KRDYAERKYN-DYGSQVKKSLDK-IEQDQIN--------QRLDFESRLRQT 586
T SS +E ++DY + + SQ +L+K I + +N RLD E L+Q
Sbjct: 962 TISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQR 1021
Query: 587 NMETKV 604
+ +TKV
Sbjct: 1022 SYDTKV 1027
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 263 KDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDT 442
+D S ++E L + + E + N + ++ N +S +PSSS P N D+
Sbjct: 34 EDSSSNVDESLDSSNPSSNEKASHTNEE----YRSKGN-QSYVPSSSNEPSPESSSNSDS 88
Query: 443 DSSDD 457
SSDD
Sbjct: 89 SSSDD 93
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 3.4
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Frame = +2
Query: 347 EVD-IFQQTTNLRSEM-PSSSTAEVPSIVHNGDTDSSDDEEKRDYAERKYNDYGSQVKKS 520
+VD IF+ T + P + + P+ + + DEE ++ E +GS +KKS
Sbjct: 2 DVDSIFKNTEETNKKRNPEEADSLEPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKS 61
Query: 521 LDKIEQDQINQRLDFE--SRLRQTNMETKVSRYSKFTKKPNIEPRNVFS-PPKVKSNKNA 691
+K D ++++ E + L T ++ V R K T N E R +S P+ A
Sbjct: 62 -EKTVLDFLDEQEAQEEPASLTPTELKRMVVRLEK-TINNNQELRIKYSTSPQRFIESEA 119
Query: 692 DVYTD-PIFNIRITKPLL 742
D+ + FN+ P+L
Sbjct: 120 DLDLEIRSFNVLSEYPIL 137
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/149 (16%), Positives = 57/149 (38%)
Frame = +2
Query: 257 DEKDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNG 436
++ D S + S E+++ ++ ++ E + + ++ S SSS +E S ++
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD-SSSSSSSSESESSSEDNDS 236
Query: 437 DTDSSDDEEKRDYAERKYNDYGSQVKKSLDKIEQDQINQRLDFESRLRQTNMETKVSRYS 616
+ SSD E + + + S + + D + D E + +++ S
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 617 KFTKKPNIEPRNVFSPPKVKSNKNADVYT 703
+ + + + S N N D T
Sbjct: 297 EDSDSTSSSSDSDSSSSSEDGNSNTDTTT 325
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/70 (20%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 440 TDSSDDEEKRDYAERKYNDYGSQVKKSLDKIEQDQINQRLDFES-RLRQTNMETKVSRYS 616
++ ++EE+ DY + ++ G + + +D+ E D ++ L+ + ++N+E +S +
Sbjct: 131 SEDGEEEEENDYIDEDVDEAGYDI-EVVDEAENDDMDNDLEANADAFDESNLEASLSPNA 189
Query: 617 KFT-KKPNIE 643
+ + +K +I+
Sbjct: 190 ELSPRKSHID 199
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 383 SEMPSSSTAEVPSIVHNGDTDSSDDEEK 466
S PSSS +PSI H +T SSD ++K
Sbjct: 185 SRRPSSSPPPIPSIPH--ETTSSDTQKK 210
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.1 bits (57), Expect = 3.4
Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Frame = +2
Query: 251 KMDEKDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVH 430
K + K E + ++L F A T + + +++PS T E PSI
Sbjct: 481 KFEPKTEATTDKKLNVPKFEFKPTATADVQTNRLKENEPKPTFFAQLPSK-TQETPSITE 539
Query: 431 NGDTDSSDDEEKRDYAERKYN-----------DYGSQVKKSLDKIEQDQ---INQRLDFE 568
N + S KR+ E+K N +G K+L++ E+ + N L+
Sbjct: 540 NKPSFFSQLSPKREETEKKDNAPSAPASTSGFSFGGFAPKTLEEKEETKAPTFNFSLNNA 599
Query: 569 SRLRQTNMETKVSRYSKFTKKPNIEPRNVFSPPKVKSN 682
S + T T + KP N+F+ K N
Sbjct: 600 SSTQDTTKPTLQFNFGSSFGKPT---SNIFNDKKTSEN 634
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 263 KDELSQLEELLSADFGENTEMNAQNNTKEVD--IFQQTTNLRSEMPSSSTAEVPSIVHNG 436
KD S + D G TE N +NT ++D I + E PSS +E
Sbjct: 105 KDLSSATDMNWDFDMGSKTESNRASNTVDLDAIISRNRKPDDDEFPSSFPSEEELQEPEQ 164
Query: 437 DTDSSDDEE 463
+ SDDE+
Sbjct: 165 ENIDSDDED 173
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 263 KDELSQLEELLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSI 424
KD + EEL +N A++ +KE+ + + TN++S S T E+ ++
Sbjct: 58 KDNYNPAEELCQLIDEQNAHNEAKHQSKEI-MLPKETNVKSCEDLSKTGEIKAL 110
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 356 IFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEEKRDYAERKYNDYGS 505
+ + N +E+ SSS + S ++ G +D +DD++ DY + + Y S
Sbjct: 578 LLEPPVNYENEVESSSGENIVS-MYTGHSDLNDDDD--DYQDEESYSYAS 624
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 82 NLVLNXTYKTTNVNFTKQCISI 147
N + N K++NVN+ ++CIS+
Sbjct: 543 NHLYNLCVKSSNVNYARECISL 564
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 5.9
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = +2
Query: 263 KDELSQLE-ELLSADFGE--NTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHN 433
+ +L++L+ +LL A + N E + K D F+ + L S+S A +PS N
Sbjct: 273 ESDLNRLKADLLRAQLKKDPNYESLEREYQKACDDFENS--LHPSENSNSQATIPSKKRN 330
Query: 434 GDTDSSDD---EEKRDYAERKYN---DYGSQVKK 517
D + D+ EEK +RKY +Y Q+ K
Sbjct: 331 FDDPTIDEMVQEEKLLNKQRKYGQNYEYAKQIAK 364
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 362 QQTTNLRSEMPSSSTAEVPSIVHNGDTDSS 451
QQ+ N + +PS+ T + PS+V NG+ S
Sbjct: 465 QQSNNSEASIPST-TPQSPSVVSNGENKPS 493
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +2
Query: 290 LLSADFGENTEMNAQNNTKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTD 445
L+S + +N N +NT D F T S T+ + N DT+
Sbjct: 65 LMSINLQKNLTPNGDSNTLTPDTFSDPTAPSSAQSVPPTSSAETTADNSDTE 116
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = +2
Query: 350 VDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEEKRDYAE 481
VD++ N + ++ ++ + + N + DDEEK++ ++
Sbjct: 429 VDVYDNQPNNPESLAQTTLLQISTPISNIKANGKDDEEKKEESD 472
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 512 KKSLDKIEQDQINQRLDFESRLRQTNMETKVSRYSKFTKKPNIE 643
+K +D++E+ +LD E ++R+T + + S N E
Sbjct: 275 RKKVDEVEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFE 318
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 7.8
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Frame = +2
Query: 341 TKEVDIFQQTTNLRSEMPSSSTAEVPSIVHNGDTDSSDDEE---KRDYAERKYNDYGSQV 511
++ IF ++ + S+ E+P + ++++SDD KR +RK + +Q
Sbjct: 341 SRSQSIFSYSSQIPDSSGDSTDQELPQSIPATESETSDDSSFSYKRSPCKRKLVEATAQP 400
Query: 512 KKSLDKIEQDQINQ-------RLDFESRLRQTNMETKVSRYSKFTKK 631
S E + Q RL +S R + + KV+ S+ KK
Sbjct: 401 AISTSVAEGASLAQVSKPLPERLQKDSMRRSSPLNEKVTASSERMKK 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,271
Number of Sequences: 5004
Number of extensions: 53238
Number of successful extensions: 216
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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