Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P09
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 50 4e-07
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 33 0.038
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 33 0.038
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.82
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.9
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.8
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 7.6
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 7.6
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 337 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 513
+ ++++ F+ LP + + N K +P + +W K L +N +GGK+ RG++ + S
Sbjct: 1 MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60
Query: 514 YKTIEKPEKVTEHTLKMACKLGWCVEM 594
Y+ I + E A LGW VE+
Sbjct: 61 YE-ILLGHPLDEAAYMKAAVLGWMVEL 86
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 601 WRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLXENVDEKI 777
++T +GQ LD +T + D S F+L + LPV+L + L +
Sbjct: 157 FQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPEN 216
Query: 778 YKSAQXICLEIGTMFQIQDD 837
K AQ I + +G FQ+QDD
Sbjct: 217 LKCAQDILIILGKYFQVQDD 236
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 33.5 bits (73), Expect = 0.038
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 607 TSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLXENVDEKIYK 783
T +GQ D ++ + + SF L + LP+ LLL N ++K Y
Sbjct: 163 TELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYD 222
Query: 784 SAQXICLEIGTMFQIQDD 837
+ + +G FQ+QDD
Sbjct: 223 TTIKLSKLLGYYFQVQDD 240
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 355 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 531
KK D P V+ ++ + P+ + L + N +GGK+ RG+ + S ++
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71
Query: 532 PEKVTEHTLKMACKLGWCVEM 594
E + E + A LGW +E+
Sbjct: 72 RE-LEEAEFRDAALLGWLIEI 91
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 33.5 bits (73), Expect = 0.038
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +1
Query: 301 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 480
N S+N T + NL+ + KK +LP +TLQ K KL G K LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308
Query: 481 KHTRGI 498
+ +G+
Sbjct: 309 EKIKGV 314
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.82
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -2
Query: 390 NYFREEIVEHF---LFINYFEIF*GCRHICAIILISDQLWPIFVCNF 259
N F ++++E+F + ++YF IF H+C+ S +W +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 414 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHICAIILISDQLWP 277
LGF + H+Y HF+ ++ +F CR I +L S L P
Sbjct: 97 LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 356 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 264
FSL+IS FF +++I A+L L + SC YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 282 WPIFVCNFTGKFETIKYTHVYYVMKSNALVEPYTXLFSTVQSTL 151
WP VC ++ FE + Y + +S L L+ T + L
Sbjct: 16 WPADVCKYSQVFEDVLVVGTYMLDESTKLRHGKLVLYDTKEDVL 59
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 421 EVPQIGDWLKKMLHYNLVGGKHTRGI 498
E+ +I D+L+ H+ +GGK RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,637
Number of Sequences: 5004
Number of extensions: 69628
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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