Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P09
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 60 2e-09
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 54 1e-07
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 46 4e-05
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 43 3e-04
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 31 1.1
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 31 1.1
01_06_0673 + 31089846-31090132,31090258-31090453 30 2.6
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 29 4.6
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +1
Query: 442 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMTLWRTSMGQ 621
W+ KM+ YN+ GGK RG++ V SY + + +V + +AC LGWCVE W +
Sbjct: 99 WVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVE---WLQASAL 155
Query: 622 HLDHVTGNRKT 654
LD +T N T
Sbjct: 156 VLDDITDNAYT 166
Score = 32.7 bits (71), Expect = 0.37
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 604 RTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLXENVDEKIY 780
+T+MGQ LD +T + D + + + LPV+ LLL Y
Sbjct: 221 QTAMGQMLDLITTHTGAKDLARYRIQGYRRIVKYKTSYYSFYLPVACALLL-NGARLSDY 279
Query: 781 KSAQXICLEIGTMFQIQDD 837
+ + +E+G FQIQDD
Sbjct: 280 VELKNVLIEMGVYFQIQDD 298
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +1
Query: 451 KMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMTLWRTSMGQHLD 630
KML YN++GGK RGI+ + S+K ++ + + + +AC LGWC+E W + LD
Sbjct: 70 KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIE---WLQAYFLVLD 126
Query: 631 HVTGNRKT 654
+ N +T
Sbjct: 127 DIMDNSQT 134
Score = 37.9 bits (84), Expect = 0.010
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 601 WRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLX-ENVDEK 774
++T+ GQ LD +T + + D + + L LPV+ LLL EN+D
Sbjct: 188 FKTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDN- 246
Query: 775 IYKSAQXICLEIGTMFQIQDD 837
+ + I +E+GT FQ+QDD
Sbjct: 247 -FGDVKNILVEMGTYFQVQDD 266
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +1
Query: 442 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 579
WL +M+ YN+ GGK RG++ + SY +++ +VTE +AC LG
Sbjct: 84 WLAQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDDFFLACVLG 129
Score = 33.1 bits (72), Expect = 0.28
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 604 RTSMGQHLDHV-TGNRKTDYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLXENVDEKIY 780
+TS+GQ LD + T D + ++++ LPV+ LLL + +
Sbjct: 233 QTSLGQMLDLISTHTGADDLAKYSIEGYRRIVKYKTAYYSFYLPVANALLL-SGAKLEDF 291
Query: 781 KSAQXICLEIGTMFQIQDD 837
+ I +E+G FQIQDD
Sbjct: 292 SGLKDILIEMGIYFQIQDD 310
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +1
Query: 442 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMT 597
W+ +ML YN+ GGK RG++ V SYK ++ +++ + +A LG C ++T
Sbjct: 47 WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLG-CFKLT 97
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 601 WRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLXENVDEKI 777
++T+ GQ LD +T + + D + + + LPV+ LLL D
Sbjct: 154 FKTASGQLLDLITTHEGEKDLNKYNIGVHRRIVQYKTSYYSFYLPVACALLL-SGEDLTK 212
Query: 778 YKSAQXICLEIGTMFQIQDD 837
Y + + I +++G FQ+QDD
Sbjct: 213 YGAVEDILVKMGIYFQVQDD 232
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 359 FFSLIISRFFEAVVIFALLFLYLI 288
FFSL I +F ++ +FAL+F Y+I
Sbjct: 362 FFSLSIRKFLISIAVFALVFFYMI 385
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 604 RTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXXNLPVSLGLLLX-ENVDEKIY 780
+T+ GQ LD +T N L++ LPV+ LLL E++D Y
Sbjct: 153 QTTSGQLLDQITTNEGRK----DLNKYRRIVEYKTAYYSFYLPVACALLLFDESLDN--Y 206
Query: 781 KSAQXICLEIGTMFQIQDD 837
+ I +E+G FQ QDD
Sbjct: 207 AQVKHILVEMGVYFQSQDD 225
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 109 RPGESDEERPQRSALRLIDVKEEDGETTERKTPK 8
R G ERP AL++ D++ EDGE ++ K K
Sbjct: 10 REGARFTERPGGDALKIEDIRMEDGEPSKTKGAK 43
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 661 NSLFFDFLLHDLNVDPLKCAIKSFRHTIPV 572
NS D + + + +KC KS+R TIPV
Sbjct: 783 NSCLMDLYVERMRFEAVKCMSKSYRPTIPV 812
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,292,074
Number of Sequences: 37544
Number of extensions: 397205
Number of successful extensions: 1006
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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