Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P09
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)    59   4e-09
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.66 
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   31   0.88 
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_9322| Best HMM Match : RGS (HMM E-Value=0.037)                      29   3.5  
SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = +1

Query: 358 KMFDDLLPEVIMTLQNKSKLSEVPQIGD---WLKKMLHYNLVGGKHTRGITTVISYKTIE 528
           K+FDD  P  +  L  + +      IGD   WL+++L YN+ GGK  RG++ + S + + 
Sbjct: 19  KLFDDAFPGFVNDLVQEEENDLA--IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLI 76

Query: 529 KPEKVTEHTLKMACKLGWCVE 591
           + E  T+  L++A  LGWCVE
Sbjct: 77  REEHFTDEHLRVALLLGWCVE 97



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 766 DEKIYKSAQXICLEIGTMFQIQDD 837
           DE  + +A+ I LE+G  FQIQDD
Sbjct: 171 DEASHANAKIILLEMGEFFQIQDD 194


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -1

Query: 643 FLLHDLNVDPLKCAIKSFRHTIPVYKPFSKYVR*LFPVFQLFCMKSQ*LFLLY 485
           F+++   +  + C + S R   PVY+ F    R L+PV+++F    + L+ +Y
Sbjct: 131 FIIYPRPLSRIPCLLSSTRVLYPVYRVFYHLPRVLYPVYRVFYHLPRVLYPVY 183


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +1

Query: 373 LLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK-PEKVTE 549
           ++ E +M +  +  L+E      WL+K    + +G +   G    ++ +T+E   E+  E
Sbjct: 98  MIQEEVMIIAERLGLNEFTGSNGWLEKFKRQHNIGQRAVSGEEAGVNPETVESWKERARE 157

Query: 550 HTLKMACKLGWCVEMT--LWR 606
            T     K  W V+ T  LWR
Sbjct: 158 ITRGWDAKNVWNVDETGCLWR 178


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 165  VQSTLLSTQPRXGXSGXGEDQEKVMRRDHND 73
            V  T++S QP+    G GE +E ++ R  ND
Sbjct: 4816 VLDTIMSIQPKDSGGGAGETRESIVMRMAND 4846


>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 165 VQSTLLSTQPRXGXSGXGEDQEKVMRRDHND 73
           V  T++S QP+    G GE +E ++ R  ND
Sbjct: 10  VLDTIMSIQPKDSGGGAGETRESIVMRMAND 40


>SB_9322| Best HMM Match : RGS (HMM E-Value=0.037)
          Length = 1068

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 121 WXRRRPGESDEERPQRSALRLIDVKEEDGETTERKTPKK 5
           W +R PG S  ER +R    L   +E D + +   +PK+
Sbjct: 627 WVKRHPGSSPSERGRRLYTSLAMAEEIDADRSLSSSPKR 665


>SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +1

Query: 208 LHDIVDMSVFNCLKFTRKVTYKYWPQLIRYKNNSANMTTASKNL-------EIINEKKMF 366
           +H  +D  +F C+  TRK  ++ +P++      S    + SK          I+N    F
Sbjct: 99  IHSEMDSEMFRCVSSTRKRNFRPYPEIFENALQSGFFLSDSKTYCVDGSIRNILNTLTSF 158

Query: 367 DDLLPEVIM 393
             +LPE+ +
Sbjct: 159 CWILPEITL 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,181,263
Number of Sequences: 59808
Number of extensions: 487417
Number of successful extensions: 1208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)