Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P08
         (373 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus...    31   5.0  
UniRef50_Q5A016 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  

>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
           Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
           (SV40)
          Length = 352

 Score = 31.5 bits (68), Expect = 5.0
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 FIXXXXXXXXANQXTAPQWMLPL 250
           FI        ANQ TAPQWMLPL
Sbjct: 276 FIEKFEAPGGANQRTAPQWMLPL 298


>UniRef50_Q5A016 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 572

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 180 LLFQVPDPVVVQIKXLLLSGCCLYIFLCXVLININYKLTVSKYIICLYYV 329
           +LF + D VV+    L+ S CCL I+L      ++ K  +  +++ LY V
Sbjct: 515 ILFNLTDNVVISAAGLIFSICCLIIYLPWNNYRVDAK--IGNFLLLLYIV 562


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,412,023
Number of Sequences: 1657284
Number of extensions: 3004357
Number of successful extensions: 7333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7328
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 13594373344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)