Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P08
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   1.6  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    24   8.8  

>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 145 FFSSSRSFLQKPRPPKKPPHY 83
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 219 KXLLLSGCCLYIFLCXVLININY--KLTVSKYII 314
           + ++L GCCL I    + I I+Y  K  V  Y I
Sbjct: 347 RDIILLGCCLNIVCMVIHITIHYTGKEFVQPYFI 380


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 218 DLHHHRIRDLK*KTKRLNLPVNFLVFQ 138
           +L+    RDL  KTKRL  P N L+ Q
Sbjct: 119 ELNFVAARDLLIKTKRLPKPFNNLLIQ 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,982
Number of Sequences: 5004
Number of extensions: 13196
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)