Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P08
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004           29   1.5  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    29   1.5  
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    27   3.6  
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362...    27   4.7  
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    27   4.7  

>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
          Length = 681

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -1

Query: 163 YQLTFWFFSSSRSFLQK-------PRPPKKP 92
           +QLT W+F SS SF QK       P PP  P
Sbjct: 253 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 283


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -1

Query: 163 YQLTFWFFSSSRSFLQK-------PRPPKKP 92
           +QLT W+F SS SF QK       P PP  P
Sbjct: 256 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 286


>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -1

Query: 163 YQLTFWFFSSSRSFLQK-------PRPPKKP 92
           +QLT W+F S+ SF QK       P PP  P
Sbjct: 251 HQLTSWYFKSTSSFEQKLAAEVASPPPPSSP 281


>08_01_0409 +
           3625071-3625228,3625829-3625905,3626310-3626889,
           3626974-3627111,3627318-3627387,3627449-3627933,
           3628681-3628890,3629259-3629326,3629855-3629961,
           3630275-3630346,3630448-3630614,3630709-3630820,
           3631464-3631650,3632174-3632286
          Length = 847

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 154 LTGKFSLXVFYFRSRIR---WWCKSXNCSSVDVAFTFFYVLY 270
           +T   ++ + YF+  +    WW +S  C      F FFY +Y
Sbjct: 480 VTAFVTVALTYFQLAVEDHEWWWRSVLCGGSTGIFIFFYCIY 521


>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 142 FSSSRSFLQKPRPPKKPPHY 83
           FSS+ + L +  PP  PPHY
Sbjct: 32  FSSAAALLGRHPPPPSPPHY 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,969,989
Number of Sequences: 37544
Number of extensions: 85012
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)