Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P08
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    27   3.2  
AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isofor...    27   3.2  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    27   3.2  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     27   3.2  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    27   3.2  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    27   3.2  
Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    27   5.7  

>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 118 QKPRPPKKPPHYFW 77
           Q+PRPP+KP H  W
Sbjct: 461 QRPRPPQKPHHEDW 474


>AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isoform 3
           protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 118 QKPRPPKKPPHYFW 77
           Q+PRPP+KP H  W
Sbjct: 417 QRPRPPQKPHHEDW 430


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 118 QKPRPPKKPPHYFW 77
           Q+PRPP+KP H  W
Sbjct: 461 QRPRPPQKPHHEDW 474


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 118 QKPRPPKKPPHYFW 77
           Q+PRPP+KP H  W
Sbjct: 461 QRPRPPQKPHHEDW 474


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 118 QKPRPPKKPPHYFW 77
           Q+PRPP+KP H  W
Sbjct: 503 QRPRPPQKPHHEDW 516


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 118 QKPRPPKKPPHYFW 77
           Q+PRPP+KP H  W
Sbjct: 461 QRPRPPQKPHHEDW 474


>Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical
           protein C53A5.10 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 201 PVVVQIKXLLLSGCCLYIFLCXVL 272
           PV+     ++++ CCLY+F C  L
Sbjct: 202 PVLFNNFLIVITTCCLYMFFCCAL 225


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 127 SFLQKPRPPKKPPHYF 80
           S L+ P+P  +PPHYF
Sbjct: 239 SVLKPPKPISEPPHYF 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,346,059
Number of Sequences: 27780
Number of extensions: 77100
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)