Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P07
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   1e-38
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.6  
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.9  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  156 bits (378), Expect = 1e-38
 Identities = 72/100 (72%), Positives = 87/100 (87%)
 Frame = +2

Query: 149 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 328
           P SKELRQK+NV+S+P+RKDDEVQV RGH+K QQVGKV+QVYRKK+V++I+RIQREKANG
Sbjct: 33  PLSKELRQKYNVRSIPVRKDDEVQVTRGHFKSQQVGKVIQVYRKKWVIHIDRIQREKANG 92

Query: 329 ATAYVGIHPSKCVIVNLKMNKDRKAILDRRAKGRLAALGK 448
           AT  VGIHPSK  IV LK++KDRK ILDR+ + +LA  GK
Sbjct: 93  ATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = +1

Query: 52  MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPL 153
           MK N +V+SS RK+RK HFSAPS +RR LMS+PL
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPL 34


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 499 LRGLHGCGSFLGVFTLVFAKCSQS 428
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 319 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 197
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 325 WCNSICRHSPFKVCDCQFEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 489
           W N IC     ++C C+  DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 457 TLVFAKCSQSALCSAIEDCFAVFI 386
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,174
Number of Sequences: 59808
Number of extensions: 346815
Number of successful extensions: 1010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)