Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P04
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 111 4e-25
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 2e-10
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 4.9
SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_59167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_58275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2) 27 8.2
SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1) 27 8.2
SB_33769| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 8.2
SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3) 27 8.2
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 111 bits (266), Expect = 4e-25
Identities = 51/96 (53%), Positives = 63/96 (65%)
Frame = +3
Query: 87 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 266
G+ + K T+Y K+ + + +RRYDRKQ G+GGQ+KP+F IVL
Sbjct: 21 GKKCRRHTLHKVTQY---KTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVL 77
Query: 267 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 374
R+EC CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 78 RMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +3
Query: 258 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 356
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 270 LECADCKVRSQVALKRCKHFELG 338
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 25.4 bits (53), Expect(2) = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +3
Query: 84 AGRTAKNVNATKYTRYHSTKSPRKG-----TLPRXRRRYDRKQQ 200
AG T+KN ++++ R H + P T R+R D K++
Sbjct: 29 AGMTSKNTSSSRKARMHQVEGPGNSRCCPETAETRRKRVDNKRR 72
Score = 21.0 bits (42), Expect(2) = 4.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +3
Query: 267 RLECADCKVRSQVALKRCKHFELGGDKKRKGQM 365
R C C++ ++ L++ GD KG+M
Sbjct: 71 RRVCRLCRLSHRLVLRKKTLARTSGDSAGKGEM 103
>SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 96 AKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKP 224
A V+ +Y STK RK + +R+ D+K+Q G P
Sbjct: 59 AARVSLAQYKTKQSTKKQRKVLRGQKKRKDDQKKQAEGANYAP 101
>SB_59167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 1 RLLTLETCCGYEYDRTRKSMSSPNFRGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRD 60
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 61 RQQSRRTARSPP 72
>SB_58275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 1 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRD 60
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 61 RQQSRRTARSPP 72
>SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)
Length = 196
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 74 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRD 133
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 134 RQQSRRTARSPP 145
>SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 1 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRD 60
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 61 RQQSRRTARSPP 72
>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
Length = 471
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 112 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRD 171
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 172 RQQSRRTARSPP 183
>SB_33769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 1 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRD 60
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 61 RQQSRRTARSPP 72
>SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 1 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDHQRRGCIVRNHRPRD 60
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 61 RQQSRRTARSPP 72
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 387 LEAFKIGSSVPFSSCHHQAQSACI 316
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 1 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDHQRRGCIVRNHRPRD 60
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 61 RQQSRRTARSPP 72
>SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)
Length = 237
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 9 RYLLFFDVC*YRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYD 188
R L C Y +RT+K + N G + + + R R+G + R R D
Sbjct: 63 RLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDHQRRGCIVRNHRPRD 122
Query: 189 RKQQGYGGQSKP 224
R+Q +S P
Sbjct: 123 RQQSRRTARSPP 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,286,947
Number of Sequences: 59808
Number of extensions: 239071
Number of successful extensions: 736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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