Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O23
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   5.7  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    25   9.9  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.9  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   9.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   9.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   9.9  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 HLCDMDKKALFSSYLSEKNEKLTVCYLML*QK 281
           ++ D+D++ + +  +SEK E  ++  LM+  K
Sbjct: 636 YISDVDRRRILNKIISEKAENCSILMLMMKDK 667


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 137 LYVFCNKNLSYVITASELDESYLAFKSCH*EISLSKLYGIFA 12
           +Y    K+  ++  A+ L + YL++      I  SKLY I A
Sbjct: 48  IYSMGKKSFPFLAIANALVQGYLSYSERKRSIFSSKLYAISA 89


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 122 YKRHTGLLSNSILRIPILKINPSL 193
           +K+ TGL S ++ ++  LK++P L
Sbjct: 549 FKQDTGLYSYNLEKVEALKVSPDL 572


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 453 LFYFVRYNTKFFDENCYCSFIV 388
           LF F RY +++ D  C  SF++
Sbjct: 555 LFDFGRYESRYCDNGCIDSFVL 576


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 92  TQLLHXINSCYKRHTGLLSNSILRIPILKINPSL 193
           TQLLH +NS  +     LS S+++  +  +   L
Sbjct: 497 TQLLHELNSTLQLEISKLSKSVVKPSLFALQAKL 530


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 423 FFDENCYCSF---IVSRIMTVRFCLRKKLRKPIRAN 325
           +FDE     F   ++ +    + CLRK + +P++ N
Sbjct: 146 YFDEEWLNGFHEKVIQKTYDHKLCLRKTISEPVKCN 181


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 320 LFNLAPHLIALLIFLLQHQVTXCKFFILFRQIRRE*SLFIHITEM 186
           L N A  L+++   +  H +    FF+L+ QI    SLF HI+ +
Sbjct: 133 LKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLF-HISHL 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,845
Number of Sequences: 5004
Number of extensions: 38466
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)