Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_O21
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 265 2e-71
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 225 3e-59
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 179 2e-45
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 37 0.012
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 3.2
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 28 5.7
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 28 5.7
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 28 5.7
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical ... 28 7.5
AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical ... 28 7.5
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 9.9
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 265 bits (650), Expect = 2e-71
Identities = 127/211 (60%), Positives = 154/211 (72%)
Frame = +2
Query: 71 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 250
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 251 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 430
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121
Query: 431 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXN 610
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 181
Query: 611 VHLSINFLVSLLKKHWXNVRSLHMKSTMGPP 703
+ LSINFLVSLLKK+W NVRSL++KSTMG P
Sbjct: 182 ISLSINFLVSLLKKNWQNVRSLNIKSTMGKP 212
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 225 bits (549), Expect = 3e-59
Identities = 106/175 (60%), Positives = 127/175 (72%)
Frame = +2
Query: 179 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 358
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 359 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 538
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQ
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127
Query: 539 MKKVLCLSVAVGHVDMTPDELAXNVHLSINFLVSLLKKHWXNVRSLHMKSTMGPP 703
MKKVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+W NVRSL++KSTMG P
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKP 182
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 179 bits (436), Expect = 2e-45
Identities = 87/151 (57%), Positives = 104/151 (68%)
Frame = +2
Query: 251 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 430
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 431 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXN 610
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120
Query: 611 VHLSINFLVSLLKKHWXNVRSLHMKSTMGPP 703
+ LSINFLVSLLKK+W NVRSL++KSTMG P
Sbjct: 121 ISLSINFLVSLLKKNWQNVRSLNIKSTMGKP 151
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 422 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDE 598
+ LG +A K P +Q+ ++ I+ T+ + +++ + S V VGH+ + +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376
Query: 599 LAXNVHLSINFLVSLLKKHWXNVRSLHMKSTMGPP 703
L N+ + + S + N+RS+++ ++ G P
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 565 YRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 422
+R + HLEL GS L+FI LL L +K R+ T F G GN
Sbjct: 348 FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 128 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 238
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 443 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLS 622
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 623 INFLVSLLKKHW 658
+L +K+W
Sbjct: 70 EKSAATLKRKYW 81
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 443 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLS 622
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 623 INFLVSLLKKHW 658
+L +K+W
Sbjct: 70 EKSAATLKRKYW 81
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 443 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAXNVHLS 622
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 623 INFLVSLLKKHW 658
+L +K+W
Sbjct: 70 EKSAATLKRKYW 81
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 41 IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 208
+GGS + + +D+L E ++ + +S K K LET+ Q G K D +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243
>AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical
protein Y44E3B.1b protein.
Length = 295
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 GRPMLFLQLPSVVIGGSLTNKMSSKVSR-DTLYECVNAVLQSSKDKKRNFLETVELQIGL 178
G P F +L + G+ T+ + +R D+L + A LQ +D++RN ++ +E Q+ L
Sbjct: 14 GNPPRFHELTDMPDNGASTSAAAGMFTRQDSL--ALAASLQQ-RDRERNPVDFMETQLDL 70
Query: 179 KNY 187
NY
Sbjct: 71 DNY 73
>AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical
protein Y44E3B.1a protein.
Length = 318
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 GRPMLFLQLPSVVIGGSLTNKMSSKVSR-DTLYECVNAVLQSSKDKKRNFLETVELQIGL 178
G P F +L + G+ T+ + +R D+L + A LQ +D++RN ++ +E Q+ L
Sbjct: 14 GNPPRFHELTDMPDNGASTSAAAGMFTRQDSL--ALAASLQQ-RDRERNPVDFMETQLDL 70
Query: 179 KNY 187
NY
Sbjct: 71 DNY 73
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 413 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 532
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,964
Number of Sequences: 27780
Number of extensions: 356289
Number of successful extensions: 878
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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