Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_O20
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 121 4e-28
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 119 1e-27
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 102 2e-22
12_01_0899 - 8689125-8689383,8689540-8689826 30 1.2
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.0
09_04_0201 + 15543318-15543488,15543956-15544069 29 2.7
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 29 2.7
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 2.7
04_01_0053 + 551027-553024 28 3.5
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 6.2
04_04_1576 - 34551095-34552645 27 6.2
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 27 6.2
10_01_0318 + 3493913-3496976,3497064-3497392 27 8.2
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729... 27 8.2
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 27 8.2
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 121 bits (291), Expect = 4e-28
Identities = 57/110 (51%), Positives = 73/110 (66%)
Frame = +3
Query: 96 RLYAKAVFTGYKRGLRNQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGP 275
RLY + GYKR NQ+E T+L+++EG + + +Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66
Query: 276 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 425
T R IWGKVTRPHGNSG VRAKFKSNLP +MG ++RV +YPS I
Sbjct: 67 ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 119 bits (286), Expect = 1e-27
Identities = 56/118 (47%), Positives = 76/118 (64%)
Frame = +3
Query: 72 KASKPRHGRLYAKAVFTGYKRGLRNQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKK 251
K + + RLY + GYKR NQ+E T+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 252 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 425
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++RV +YPS I
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 102 bits (244), Expect = 2e-22
Identities = 49/105 (46%), Positives = 66/105 (62%)
Frame = +3
Query: 72 KASKPRHGRLYAKAVFTGYKRGLRNQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKK 251
K + + RLY + GYKR NQ+E T+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 252 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 386
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 400 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 266
R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 419 GRIQHHSYSVSHSLGREVRLE 357
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 325 GRVTLPQIARSLVFLPRGPPGIGVLFL 245
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 135 HAYXL*IRPLRTACRGGALMLCE-GPLWAPQELLE 34
H++ +RP+R C G L E G L +PQEL++
Sbjct: 513 HSFHATVRPIRIQCSEGVEKLYELGVLQSPQELVQ 547
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 290 GFFATGTSGNWCPLLSSVHIDAMLA 216
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 332 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 243
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 277 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 408
+A +P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 243 LCTHRRNACQHKRLHHYGLLLL 178
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 283 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRXFAPSTLRRAVXSCWLRRPR 131
+P+ PPG LA + Q L R FA T A SC +RR R
Sbjct: 87 VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 394 LCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT 233
LC + +G + LA LPEL ++ ++ + P PP G+++L+LY+
Sbjct: 184 LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPRCGLVYLSLYS 234
>03_02_0306 +
7290086-7290283,7290998-7291154,7291270-7291377,
7291494-7291621,7291733-7291861,7291945-7292012,
7292130-7292361
Length = 339
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 413 IQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 273
I H + + H R+ ++ + W G L P+S +L FF G
Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 27.1 bits (57), Expect = 8.2
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +1
Query: 163 LSSRLKEQKXVMMQSFMLASIASMCTELRRGHQFPEVPVAKKPSCVLSGAR*PAHMATLA 342
LSS ++ M S M + S+C+ G++ +A P C A L
Sbjct: 402 LSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQ 461
Query: 343 VSEPSSSLTSLPRLWDTEYE 402
+ PSS+ R D E
Sbjct: 462 IGTPSSARPPFDRAQDKARE 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,764
Number of Sequences: 37544
Number of extensions: 291628
Number of successful extensions: 709
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -