Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_O20
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 147 3e-36
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 30 1.0
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 30 1.0
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 27 7.4
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 27 7.4
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 27 7.4
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 147 bits (357), Expect = 3e-36
Identities = 70/119 (58%), Positives = 86/119 (72%)
Frame = +3
Query: 69 RKASKPRHGRLYAKAVFTGYKRGLRNQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAK 248
R+ S P GRLY KA+FTG+KRGLR Q E T+LLK+EG + DA FYAGK VY+Y+A
Sbjct: 8 RRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAH 67
Query: 249 KRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 425
+T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G RIRV+LYPS I
Sbjct: 68 NKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 365 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 210
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 365 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 210
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 950 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 424 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 329
+L+G S+ RI AW +D+ + T P P
Sbjct: 38 VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 144 NQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 293
N E KVE AK + KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 144 NQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 293
N E KVE AK + KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 144 NQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 293
N E KVE AK + KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 144 NQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 293
N E KVE AK + KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 144 NQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 293
N E KVE AK + KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 144 NQHEXTALLKVEGAKXRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 293
N E KVE AK + KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,411
Number of Sequences: 27780
Number of extensions: 213716
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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