Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O16
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    57   3e-09
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    29   0.86 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   6.1  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
 Frame = +3

Query: 429 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 599
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 600 NGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIW 779
           NG W  K +L                +    +  ++G   +IV  L+L++DFAH+WAE  
Sbjct: 127 NGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAERC 186

Query: 780 VSKYXXTXS 806
           V +   + S
Sbjct: 187 VDRVLTSDS 195


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 773 FSPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILN 594
           FS G  +I   N L NNV E +N +  + C+     +  +C    TN+    D P+T  N
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPET-FN 104

Query: 593 SS 588
           SS
Sbjct: 105 SS 106


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 608 LGHQIFIGYWWHYRSILHPRRSICFDMDGV 697
           L HQ F  +W+  R +++P R +C+ +  V
Sbjct: 544 LYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 121 ICILILLYAHINIKIFYICH*TQQNSEF 38
           I  ++++ A   +KI YICH   QN  F
Sbjct: 156 IAAVVVIIAVAMVKILYICHWLLQNFNF 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,556
Number of Sequences: 5004
Number of extensions: 75323
Number of successful extensions: 205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)