Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O16
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    73   2e-13
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   2.8  
09_04_0452 - 17710180-17710968                                         28   8.5  
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   8.5  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 36/123 (29%), Positives = 60/123 (48%)
 Frame = +3

Query: 498 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXX 677
           AV R++    +FF ++A+IM G+K  KDPR  I +G W  K +                 
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK-IFCWVVIVFLMFFVPNGV 137

Query: 678 ASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWVSKYXXTXSKGWYAXLLISMLTCLAL 857
            S +      G   ++++Q++L++DF H W E WV+K      + WY  LL+  + C  +
Sbjct: 138 VSFYESISKFGSGLFLLVQVVLLLDFVHGWNENWVAK----DEQFWYMALLVVSVVCYIV 193

Query: 858 TLT 866
           T +
Sbjct: 194 TFS 196


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = -3

Query: 460 FPGNSPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAE 281
           FPG SP+   +  F QN    + L +P      +   ++ S  A I+RE++   +     
Sbjct: 472 FPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQP 531

Query: 280 QHSEQAVLPQQHASCA 233
            +       Q+  S A
Sbjct: 532 MNLSPPTSEQKEGSTA 547


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 507 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNG-FWAIKYLLV 632
           R+T AT   +  L +  +++G+  SKD  AG+ NG +W   +L++
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLII 194


>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 755 KINDKNELDNNVAEASNHSKHHPCRSKLTSWDEEC 651
           +++ ++++D   AE +   K   CR +L+S D EC
Sbjct: 595 EVSSEHKIDTFSAEVTTEDKGKTCRYRLSSIDYEC 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,621,409
Number of Sequences: 37544
Number of extensions: 456254
Number of successful extensions: 1070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)