Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O16
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...   151   6e-37
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...   132   2e-31
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    54   1e-07
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    28   7.6  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    28   7.6  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    28   7.6  

>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score =  151 bits (366), Expect = 6e-37
 Identities = 81/191 (42%), Positives = 109/191 (57%), Gaps = 1/191 (0%)
 Frame = +3

Query: 303 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCD 479
           +ST++R+MYA +L   T + CI L PG+ N+L +   FC    +            + C 
Sbjct: 35  SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85

Query: 480 EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXX 659
            A G+ AVYR+  AT  F+LL  LIMIGVK SKD R+ IQNGFW  KYL++         
Sbjct: 86  HATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDGRSSIQNGFWFFKYLILGALIVGFFF 145

Query: 660 XXXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWVSKYXXTXSKGWYAXLLISM 839
                 A+  M  G+IGGF +I+IQLILI+DFAH  AE WV+ Y  + S   YA LL+++
Sbjct: 146 IRSESLATPLMYIGLIGGFMFILIQLILIVDFAHGLAEAWVTSYEESESNYCYAGLLVTV 205

Query: 840 LTCLALTLTGI 872
               AL LT +
Sbjct: 206 FGGFALALTAV 216


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score =  132 bits (320), Expect = 2e-31
 Identities = 73/178 (41%), Positives = 100/178 (56%)
 Frame = +3

Query: 303 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 482
           NST++R+MYALML+  T +  + L PG+  +L +  +  +  +            V+C+ 
Sbjct: 35  NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYAG--------VNCEH 86

Query: 483 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXX 662
           A+GY AVYR+      FF L  L+M GV SSKD R+ IQNGFW  KYLL+          
Sbjct: 87  AIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFGIIGGFFFI 146

Query: 663 XXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWVSKYXXTXSKGWYAXLLIS 836
                A+  M  GM+G F +I+IQLILI+DFAH  AE   S+Y    S+  YA LLI+
Sbjct: 147 GSETLATPLMYIGMLGAFLFILIQLILIVDFAHGLAE---SQYEDNDSRACYAGLLIT 201


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 303 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 479
           +ST++R+MYA +L   T + CI L PG+ N+L +   FC    +            + C 
Sbjct: 35  SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85

Query: 480 EAVGYLAVYRITFATCLFFLLMALIM 557
            A G+ AVYR+  AT  F+LL  LI+
Sbjct: 86  HATGFQAVYRVCAATASFYLLFILIV 111



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +3

Query: 738 ILIIDFAHSWAEIWVSKYXXTXSKGWYAXLLISMLTCLALTLTGI 872
           ILI+DFAH  AE WV+ Y  + S   YA LL+++    AL LT +
Sbjct: 108 ILIVDFAHGLAEAWVTSYEESESNYCYAGLLVTVFGGFALALTAV 152


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 266 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 364
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 266 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 364
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 266 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 364
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,011,898
Number of Sequences: 27780
Number of extensions: 425302
Number of successful extensions: 1135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)