Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O07
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    31   1.5  
01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941...    29   3.5  
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    29   4.6  
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316...    28   8.0  

>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +1

Query: 328 VKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEG 507
           VK    K        F R+    +EN+ L ++        QF+ + F+    KD + ++ 
Sbjct: 710 VKSEVCKEAGYASSLFQRLMHSSSENKRLTKQYMMDPSISQFVSENFYEGRLKDDSTVKS 769

Query: 508 IDLNKLFEDLP 540
            D NKL ++ P
Sbjct: 770 DDYNKLLKEFP 780


>01_06_0133 -
           26793335-26793380,26793696-26793907,26794009-26794134,
           26794258-26794335,26794857-26795014,26795230-26795278,
           26795369-26795414,26795527-26795654,26796154-26796237,
           26796317-26796409,26796505-26796549,26796792-26796851
          Length = 374

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 322 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 459
           E+ ++SR + +  T+E   +V  L AEN  L  ++  L++  + L+
Sbjct: 237 ESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLR 282


>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 556 LCPYRLVSLQRACLSRYLPIRWCLSLLEQKTSLSGTEVVLIKFLLSPRAL 407
           LC  +L S+  +CL   L + +  S +    +  G   VL++ +LS +A+
Sbjct: 444 LCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAI 493


>08_01_0361 +
           3165516-3165564,3166316-3166386,3166481-3166562,
           3166677-3166792,3166892-3167053,3167158-3167202,
           3168097-3168174,3168632-3168742
          Length = 237

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 331 KKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 459
           + S   +K+R  E  S +SKL  EN+V  ++ + L  +L+ L+
Sbjct: 163 RSSAEPTKERPTEPSSMISKLNEENRVAIQQNQKLRHELELLR 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,186
Number of Sequences: 37544
Number of extensions: 238031
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)