Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O06
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   2.4  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   4.2  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   5.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   5.6  

>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 364 CSLSKDIMFSFFTTHRSFFEYLVQPPKHYFLKTFMVILLELTLSMDRILSRASSKIAGV* 185
           C  S    FS  T  ++FF+  +  P    L   M   + +   +  ILS   +KI    
Sbjct: 40  CLNSSRSGFSMVTLKKAFFDKYIFQPDSVLLTGLMTPTIRIRTQVKPILSVFRNKI---- 95

Query: 184 FDFTPYLRT 158
           FDF P + T
Sbjct: 96  FDFIPTVVT 104


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +3

Query: 165 KYGVKSNYTPAILEEALDKIRSIERVSSNNITI 263
           K+G K+  + +ILE+A DK+++ +R++  N+ +
Sbjct: 601 KFG-KAKRSISILEKAADKVKTADRLAIYNVLL 632


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -2

Query: 412 KISSSLKSFPSLLVN*CSLSKDIMFSFFTTHRSFFEYLVQPPKHYFLKTFMVILLELTLS 233
           +IS SL++   L        +D  FS  TT  S  +  +QPP      T   I LEL  S
Sbjct: 673 RISKSLRNLQDLYK--LLAIRDTSFSN-TTPSSISKLSIQPPTFQLFSTLETIYLELKDS 729

Query: 232 M 230
           M
Sbjct: 730 M 730


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 413 VHGMGSMIFSITF*SPVTYDLISIH 487
           +HG+  MIFS     P+ YD ISI+
Sbjct: 163 LHGILFMIFSAQSYKPLLYDKISIY 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,328
Number of Sequences: 5004
Number of extensions: 47143
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)