Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O06
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529...    28   5.7  
12_02_1261 + 27410921-27413401                                         27   10.0 

>03_02_0055 -
           5295466-5295476,5295519-5296635,5296760-5296855,
           5297097-5297263,5297345-5297519,5297521-5297699,
           5298004-5298109
          Length = 616

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 297 TRYSKNERCVVKKENIISLLKEH*LTRRDGKLFKDDDILFMEW 425
           T + +NE      + ++ L ++H +T R   +F DD    M+W
Sbjct: 311 TEFHQNEEDYKVSDKMVELAEKHNITLRGHNVFWDDQDKQMDW 353


>12_02_1261 + 27410921-27413401
          Length = 826

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 88  QKSELNIEKVNKMPRKKQK*LSPVCVNM 171
           Q S   I K NK  RKK K LSP   N+
Sbjct: 225 QDSATTISKSNKRERKKSKYLSPPYTNL 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,234
Number of Sequences: 37544
Number of extensions: 252556
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)