Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O06
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    30   0.96 
U64849-3|AAC48050.2|  351|Caenorhabditis elegans Twik family of ...    29   2.9  

>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 385 PSLLVN*CSLSKDIMFSFFTTHRSFFEYLVQPPKHYFLKTFMVILLELTLSM 230
           P LL+  C ++ DI +SF  +    +  ++   KH  +K   + +LE +++M
Sbjct: 40  PELLLIYCKIAADICYSFTVSIMKSYFLVILCYKHLAVKNLSIYMLETSVTM 91


>U64849-3|AAC48050.2|  351|Caenorhabditis elegans Twik family of
           potassium channelsprotein 10 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -2

Query: 349 DIMFSFFTTHRSFFEYLVQPPKHYFLKTFMVILLELTLSMDRILSRASSKIAGV*FDFTP 170
           D    FF   R   + L    K   +  FMV+LL L ++   I   A SKI GV      
Sbjct: 219 DAFVKFFHEVRRIVQRLKMSLKIQNITAFMVVLLILLVAYSVIGGIAYSKIVGVPMIEGV 278

Query: 169 YLRTPGLITFAF 134
           Y  T  + T  F
Sbjct: 279 YFSTITIFTIGF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,991
Number of Sequences: 27780
Number of extensions: 250424
Number of successful extensions: 526
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)