Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O05
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.3  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   9.3  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   9.3  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +3

Query: 621 KLQNLRTNPPPSGGTAFVNDAYEDDLSDDSSQLYTIIDYQEVCAALTXV 767
           +++NL +   PS  T+F+N + + +  DD+  L +I+    + + ++ V
Sbjct: 72  RIENLHSETFPSDYTSFLNQSPKKNDFDDNMSLNSIVTMGSILSNVSSV 120


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 370 FVPSDETVRHIHRHLAVGTGIRRKREHLFVVIRGRAFLLLSAQHHDAGA 224
           ++ +D+  R  +R+L +GTG+R+       +  GR  +L   + HD+ A
Sbjct: 824 WIVADDQKRK-YRYLCIGTGVRKNG-----LTTGRLLILTMNKDHDSNA 866


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +3

Query: 201 LKGPEDDPAPASWCWALRRRNARPRMTTKRCSRF----LLIPVPTARWRW-MCRTVSSLG 365
           L GP+D     +W  A + RN     +   C+ F        VP    ++ +CRTV+ LG
Sbjct: 56  LDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGSSIFSGAVPEVMVKFHVCRTVALLG 115

Query: 366 TKL 374
             L
Sbjct: 116 ISL 118


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 204 KGPEDDPAPASWCWALRRRNARPRMTTKRCSRFLL 308
           K P+ DP  +S     R  N R + + + C+RF+L
Sbjct: 266 KPPQIDPHSSSLADEYRESNKRLQESKESCARFIL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,794
Number of Sequences: 5004
Number of extensions: 56226
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)