Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_O05
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 30 2.4
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 29 4.2
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 29 4.2
10_08_0885 - 21290394-21291347 29 5.5
11_06_0510 + 24420402-24422582 28 7.3
07_03_0351 + 17082571-17083087,17083135-17083148 28 7.3
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594... 28 7.3
11_02_0130 + 8633477-8633605,8633618-8633698 28 9.7
08_02_1603 - 28156141-28157025,28157547-28157999 28 9.7
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 28 9.7
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 298 REHLFVVIRGRAFLLLSAQHHDAGAGSSSGP 206
R LF+V+ G LLL HH +GA ++S P
Sbjct: 10 RGQLFLVVLGLLLLLLGEVHHGSGARTASLP 40
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 326 RGGDRYQKKARASLCRHPGAGVSPPQRPAPR 234
RGG R ++K +AS A SPP PA R
Sbjct: 20 RGGGRNRRKHQASSSSGAAASASPPSPPAKR 50
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = -2
Query: 353 NCPAHPPPSRGGDRYQKKARASLCRHPGAGVSPPQRPAPRCWSRIVF 213
N P P P G K+ C G G PP RP P VF
Sbjct: 96 NAPVSPSPVNGSGHASPKSPTPSC---GKGNQPPSRPTPTSPQGAVF 139
>10_08_0885 - 21290394-21291347
Length = 317
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -2
Query: 296 RASLCRHPGAGVSPPQRPAP 237
RASL R G G PP RPAP
Sbjct: 215 RASLKRGKGGGCVPPPRPAP 234
>11_06_0510 + 24420402-24422582
Length = 726
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 173 DPGMHYKQLFKRPRRRSGSSIVVLGAEEEKRPPPDDD 283
DPG +Y + + + R+ S +V ++RPP D+D
Sbjct: 178 DPGPNYAKFVEECQSRTESGLVAKIVIVQERPPDDED 214
>07_03_0351 + 17082571-17083087,17083135-17083148
Length = 176
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -2
Query: 347 PAHPPPSRGGDRYQKKARASLCRHPGAGVSPPQRPAPRC--WSR 222
P P P+R D + + +L H A PP R A WSR
Sbjct: 32 PPEPKPARWPDVFHARLFTNLTNHSAASTGPPLRVADLYYDWSR 75
>03_05_0489 -
24858483-24858637,24858811-24858921,24859013-24859421,
24859746-24859800,24860042-24860318,24860442-24860562,
24860831-24861438,24861552-24861741
Length = 641
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 499 TSWAGGRGGASPGYLTRGH-SRSRSFSCAI 413
T GG GGA PG L+ G R R SC++
Sbjct: 65 TGHGGGNGGAFPGGLSSGRGGRVRQRSCSV 94
>11_02_0130 + 8633477-8633605,8633618-8633698
Length = 69
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 242 LGAEEEKRPPPDDDKEMLSLSSDTG 316
+G ++EKR PP+DD M ++ G
Sbjct: 26 VGGDDEKRDPPEDDDNMHEMNMRRG 50
>08_02_1603 - 28156141-28157025,28157547-28157999
Length = 445
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 517 STWSLETSWAG-GRGGASPGYLTRGHSRSRSFSCAIDL 407
STW TSWA RGG +P L H+R + S ++L
Sbjct: 174 STWHFMTSWAELCRGGGAPSLLP-VHNRGMARSVRVNL 210
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = -3
Query: 355 ETVRHIHRHLAVGTGIRRKREHLFVVIRGRAFLLLSAQHHDAGAGSSSGPFK*LFVMHPG 176
E I +HLA +RR H GR H + +GS S P +F +
Sbjct: 123 ELEERIIQHLAAAAAMRRSHRH------GRR------DGHRSRSGSHSRPQIVVFSRNEA 170
Query: 175 IP---IHTSLSTDTEHKQKKQKRSVH 107
IP +H S D +H+Q S H
Sbjct: 171 IPGGSLHASSGQDEDHEQSSDLGSAH 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,299,088
Number of Sequences: 37544
Number of extensions: 496116
Number of successful extensions: 1796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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