Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_O01
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    65   3e-12
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    64   6e-12
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.8  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   6.4  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 64.9 bits (151), Expect = 3e-12
 Identities = 30/63 (47%), Positives = 33/63 (52%)
 Frame = +2

Query: 2   CGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXXXXXXXXXXXXXNGFKEG 181
           CG  S+HIQKS CA CGYPAAK RSY+W  KA                      NGF+ G
Sbjct: 22  CGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81

Query: 182 KPT 190
           KPT
Sbjct: 82  KPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 63.7 bits (148), Expect = 6e-12
 Identities = 31/70 (44%), Positives = 34/70 (48%)
 Frame = +2

Query: 2   CGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXXXXXXXXXXXXXNGFKEG 181
           CG  S+HIQKS CA CGYPAAK RSY+W  KA                      NGF+ G
Sbjct: 22  CGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81

Query: 182 KPTPPKKAVA 211
           KP     A A
Sbjct: 82  KPAAAVAASA 91


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 247 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 152
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 43  PMWISCSKITILPLVSEG*AQEDYW 117
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,527
Number of Sequences: 5004
Number of extensions: 12151
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)