Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N24
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    29   0.82 
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.1  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    28   1.9  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   4.4  

>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +2

Query: 425 VPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFY 604
           +PQI+     +S EG+    +L  ++    +S+YN   + NI   ++  +     +  F+
Sbjct: 35  IPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYNQVQELNIALKVQPELFQALAFTTFF 94

Query: 605 FVLKY 619
             L Y
Sbjct: 95  QCLYY 99


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 498 ISISMA*IYIPSADLFSRMDIICGTLRNKDDSIVMVLSALAKISIKYGTSIILLSNQ 328
           IS+S      P ++L  RMDII      ++D I    S+L    IK     +LLS +
Sbjct: 98  ISLSSVRASFPISELGIRMDIIKARAEPREDEIRASFSSLVNKEIKRTVEELLLSKR 154


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 784 DTIYIGHFSESAQWRAKRHQIGENLFRQ*IHDETEHRSKV*SDHYGNN-WKIQHV 623
           D +YI  +     WR +  ++ + L     ++E + R++    ++GN+ WK+  V
Sbjct: 96  DRLYINCYEYFIVWRGEARRLRKLLQEAKTYEEWKERARALDKYFGNDEWKLDPV 150


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
 Frame = +2

Query: 422 KVPQIMSIREKRSAEGIYIQAMLMEIIG---FTIMSLYNYTNKYNIMTYMEYPIIL---- 580
           ++PQI+   + +S EG+ I   ++  +G   +    L    + Y   TY   P IL    
Sbjct: 193 RIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDYLNYTYANLPWILGAFS 252

Query: 581 --FQVYVMFYFVLKYKN 625
             F    +FY  +KY+N
Sbjct: 253 TIFLDIYIFYQFIKYRN 269


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -1

Query: 784  DTIYIGHFSESAQWRAKRH----QIGENLFRQ*IHDETEHRSKV*SD-HYGNNWKIQHVL 620
            D  YIG   E+++W + RH    ++GE+++    +D+ E +  +  D + G ++ I+H+ 
Sbjct: 1861 DRSYIGFHFENSKWESLRHVRVNRVGEHIYPLISYDQDELKHYMVVDVNLGEDY-IKHIT 1919

Query: 619  I 617
            +
Sbjct: 1920 L 1920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,435
Number of Sequences: 5004
Number of extensions: 71349
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)