Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N24
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539...    38   0.010
02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281...    32   0.50 
01_06_1610 - 38625427-38625726,38625814-38625885,38626001-386261...    28   8.1  

>07_03_0368 +
           17351199-17351351,17352166-17352243,17353774-17353927,
           17353997-17354019,17354242-17354319,17354407-17354466,
           17354745-17354805,17355080-17355243
          Length = 256

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 362 LIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNK 541
           L+ + +  L    + +S   K+PQI+ I +  S  G+ + +  +E++G+TI   Y     
Sbjct: 54  LLRLMSKILGYHVVAASAIGKLPQILKILKHGSVRGLSVASFELEVVGYTIALAYCIHKG 113

Query: 542 YNIMTYMEYPIILFQ 586
                Y E   +L Q
Sbjct: 114 LPFSAYGELAFLLIQ 128


>02_01_0389 -
           2816878-2817390,2817552-2817670,2817803-2817865,
           2818229-2818355,2818607-2818827,2818973-2819136,
           2819766-2819846,2820657-2820728,2820857-2820995,
           2821206-2821690,2821995-2822550,2822610-2822666,
           2822705-2822774
          Length = 888

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = +2

Query: 341 KMIDVPYLIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMS 520
           K I    L  I    ++T+ ++  LFL + +++  ++KR A G   ++ L+E   F+   
Sbjct: 506 KKIKGSLLSAIIITIVATVALIVVLFLLLRRMLKAKDKRRAAGPTYESALLENREFSYRE 565

Query: 521 LYNYTNKYN 547
           L + TN ++
Sbjct: 566 LKHITNNFS 574


>01_06_1610 -
           38625427-38625726,38625814-38625885,38626001-38626117,
           38626509-38626674,38626768-38626815,38626889-38626962,
           38627126-38627243,38627332-38627420,38627512-38627687,
           38627785-38627898,38627981-38628051,38628431-38628477,
           38628581-38628721,38629095-38629136
          Length = 524

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -1

Query: 652 YGNNWKIQHVLIFENKVEHYVDLEKYD--RVLHIGHDVILVCIIVER 518
           +G  +K+   L+ +NK+ H+ D  KYD  R+ ++G+D + +  +V R
Sbjct: 78  HGGTYKVLRNLL-KNKLVHH-DATKYDGYRLTYLGYDFLAIKTLVNR 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,655
Number of Sequences: 37544
Number of extensions: 397659
Number of successful extensions: 816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)