Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N23
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.37 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.37 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = +1

Query: 496 LSGGQRARVGLARACYRQADIYLLDDPLSAVDTHVGKHLVSECVNGLLQNHTRILVTH-- 669
           +SGG++ R+  A        +   D+P S +D+ +   ++       +   T I   H  
Sbjct: 220 ISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQP 279

Query: 670 XLHHLKTADKVIILRNGEIEMXG 738
                   DK++++  G     G
Sbjct: 280 SSEVYSMFDKLLLMSEGRTAFLG 302


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = +1

Query: 496 LSGGQRARVGLARACYRQADIYLLDDPLSAVDTHVGKHLVSECVNGLLQNHTRILVTH-- 669
           +SGG++ R+  A        +   D+P S +D+ +   ++       +   T I   H  
Sbjct: 220 ISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQP 279

Query: 670 XLHHLKTADKVIILRNGEIEMXG 738
                   DK++++  G     G
Sbjct: 280 SSEVYSMFDKLLLMSEGRTAFLG 302


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 541 YRQADIYLLDDPLSAVDTHVGKHLVSECVNGLLQNHT 651
           Y   D Y ++ P+   D H G H V+   N  LQN T
Sbjct: 429 YVSYDFYKMNHPVYHKDPHYGFHNVT---NTTLQNLT 462


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 388 ISFIVRIFIVQHYF*LHFVILIWVY 314
           I F V   +  +YF   F+IL+ VY
Sbjct: 90  IIFTVHFLLCTYYFYYAFIILLCVY 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,216
Number of Sequences: 336
Number of extensions: 3491
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)