Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N15
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...   198   9e-52
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    79   6e-16
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    41   2e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    40   5e-04
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    38   0.002
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    28   1.6  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.7  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    27   2.7  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    27   3.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.8  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    26   6.3  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    26   6.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.4  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   8.4  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  198 bits (482), Expect = 9e-52
 Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
 Frame = +3

Query: 270 MGKKNSKLKQDTIDRLTSATYFTEKEIRLWHKGFLKDCPNGLLTEQGFIKIYKQFFPQGD 449
           MGK  SKL QD +  L  +T F +KE++ W+KGF KDCP+G L +  F KIYKQFFP GD
Sbjct: 1   MGKSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGD 60

Query: 450 PSKFASLVFRVFDENNDGSIEFEEFIRALSVTSRGNLDEKLHWAFRLYDVDNDGYITRDE 629
           PS FA  VF VFD + +G I+F+EFI ALSVTSRG L++KL WAF+LYD+DN+G I+ DE
Sbjct: 61  PSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDE 120

Query: 630 MYNIVDAIYQMVGQTPQ-PEDENTPXKRVDKIFD 728
           M  IVDAIY+MVG   + PEDE+TP KRV+KIF+
Sbjct: 121 MLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFN 154



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 450 PSKFASLVFRVFDENNDGSIEFEEF 524
           P K  + +F + D+N DG +  EEF
Sbjct: 145 PEKRVNKIFNMMDKNKDGQLTLEEF 169


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
 Frame = +3

Query: 270 MGKKNSKLKQDTIDRLTSATYFTEKEIRLWHKGFLKDCPN--GLLTEQGFIKIYKQFFPQ 443
           MG+  S++ +D I    S + F+ +EI    K F+K   N  G +    F+ I     P 
Sbjct: 1   MGQSQSQIFEDLI----SNSSFSNEEIERIRKRFIKIDANQSGSIDRNEFLSI-----PS 51

Query: 444 GDPSKFASLVFRVFDENNDGSIEFEEFIRALSVTS-RGNLDEKLHWAFRLYDVDNDGYIT 620
              +  AS +F V DE+  G ++F+EFI +LSV S  GN +EKL +AF++YD+D DGYI+
Sbjct: 52  VASNPLASRLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYIS 111

Query: 621 RDEMYNIV 644
             E+Y ++
Sbjct: 112 NGELYLVL 119



 Score = 28.7 bits (61), Expect = 0.90
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
 Frame = +3

Query: 405 QGFIKIYKQFFPQGDPSKFASLVFRVFDENNDGSIEFEEFIRALSVTSRGNLDEK----- 569
           Q FI     F   G+  +     F+++D + DG I   E    L +    NL E      
Sbjct: 76  QEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135

Query: 570 LHWAFRLYDVDNDGYITRDEMYNIV 644
           +       D D DG I+ +E  +IV
Sbjct: 136 VDKTIMEVDKDRDGKISFEEFKDIV 160


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = +3

Query: 486 DENNDGSIEFEEFIRALSVTSRG-NLDEKLHWAFRLYDVDNDGYITRDEMYNIVDAIYQM 662
           D + +G+I+F EF+  ++   +  + +E++  AF+++D D +GYIT +E+ +++ ++ + 
Sbjct: 58  DADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGER 117

Query: 663 VGQ 671
           + Q
Sbjct: 118 LSQ 120



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = +3

Query: 387 NGLLTEQGFIKIYKQFFPQGDPSKFASLVFRVFDENNDGSIEFEEFIRALSVTSRGNLDE 566
           NG +    F+ +  +     D  +     F+VFD++ +G I  EE    L+        E
Sbjct: 62  NGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQE 121

Query: 567 KLHWAFRLYDVDNDGYITRDEMYNIVDA 650
           ++    R  D D DG I  +E   ++ +
Sbjct: 122 EVADMIREADTDGDGVINYEEFSRVISS 149



 Score = 28.7 bits (61), Expect = 0.90
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 540 VTSRGNLDEKL---HWAFRLYDVDNDGYITRDEMYNIVDAIYQMVGQTPQPEDENTPXKR 710
           +T+R   DE++     AF L+D D DG IT +E+      + + +GQ+P   +       
Sbjct: 1   MTTRNLTDEQIAEFREAFSLFDRDQDGNITSNEL----GVVMRSLGQSPTAAELQDMINE 56

Query: 711 VD 716
           VD
Sbjct: 57  VD 58


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +3

Query: 390 GLLTEQGFIKIYKQFFPQGDPSKFASLVFRVFDENNDGSIEFEEFIRALSVTSRGNLDEK 569
           G L  + F+++  +   + DP +     F +FD++  G I      R     +    D++
Sbjct: 88  GYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQE 147

Query: 570 LHWAFRLYDVDNDGYITRDEMYNIV 644
           L      +D+D DG I   E   I+
Sbjct: 148 LEAMIEEFDLDQDGEINEQEFIAIM 172



 Score = 33.5 bits (73), Expect = 0.032
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 471 VFRVFDENNDGSIEFEEFIRALS--VTSRGNLDEKLHWAFRLYDVDNDGYIT 620
           + R FD+   G ++ E+F+R ++  +  R  L+E +  AF L+D D  G I+
Sbjct: 78  ILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEE-IKRAFELFDDDETGKIS 128


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/67 (22%), Positives = 36/67 (53%)
 Frame = +3

Query: 453 SKFASLVFRVFDENNDGSIEFEEFIRALSVTSRGNLDEKLHWAFRLYDVDNDGYITRDEM 632
           S F   +F  FD++  GS+  ++ +  ++     ++   + + F LYD + DG++ + ++
Sbjct: 578 SSFLRHLFLRFDKSMTGSLSLQDLVSGIAELKFRDVMRNISFIFELYDFNGDGFMDKPDV 637

Query: 633 YNIVDAI 653
             + +AI
Sbjct: 638 LKVSEAI 644


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 543 TSRGNLDEKLHWAFRLYDVDNDGYITRDEM 632
           T R  +DE+   AF L+DV + GYI  +++
Sbjct: 5   TKRLEMDEEAEEAFDLFDVTHKGYIDFEDL 34


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 387 NGLLTEQGFIKIYKQFFP-QGDPSKFASLVFRVFDENNDGSIEFEEFI 527
           + LL E+G    +K+F   QG+    A +  R   E +DG +E+ E I
Sbjct: 248 SNLLKEKGIDLNHKRFLILQGEVESIAQMKPRAISEGDDGLLEYLEDI 295


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
 Frame = +3

Query: 567 KLHWAF-----RLYDVDNDGYITRD 626
           +LHW+      RLY  + DGYI RD
Sbjct: 413 RLHWSIGVTLERLYQAEMDGYIVRD 437


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 474 FRVFDENNDGSIEFEEFIRALSVTSRGNLDEKLHWAFRLYDVDNDG 611
           FRVFD++N G IE  +F   +        D ++    +  D  N G
Sbjct: 84  FRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSG 129



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 561 DEKLHWAFRLYDVDNDGYI 617
           +E+   AFR++D DN GYI
Sbjct: 77  EEEYIKAFRVFDKDNSGYI 95


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +3

Query: 423 YKQFFPQGDPSKFASLVFRVFDENNDGSIEFEEFIRALSVTSRGNLDEKLHWAFRLYDVD 602
           Y   FP  D S    L  +VF+ ++  +I+F+E  R L++ +  +++ +L      Y ++
Sbjct: 408 YFMIFPHSDQS----LQNKVFELHSTLAIKFDELFRLLNLENEESVEWRLIKKVFEYRLN 463

Query: 603 NDGYITRDEMYNIVD 647
            D YI +    + +D
Sbjct: 464 LDLYILKQFYCHYLD 478


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 245 RRLDFATENGQEELE 289
           RRLDF++E+G+EE E
Sbjct: 125 RRLDFSSEDGEEEEE 139


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 514 NSIDPSLFSSNTLNTNDAN 458
           N IDPSL+S  +L TND +
Sbjct: 247 NRIDPSLYSKWSLPTNDVD 265


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/78 (19%), Positives = 31/78 (39%)
 Frame = +3

Query: 489  ENNDGSIEFEEFIRALSVTSRGNLDEKLHWAFRLYDVDNDGYITRDEMYNIVDAIYQMVG 668
            E ND  IE+ EF   L  ++     +     F    V +D  +  D + + V +   +  
Sbjct: 1695 ETNDQDIEYNEFYSQLDTSTSDIFQDTSVDGFPDLQVSSDINVRNDRLSSFVMSSEDLRS 1754

Query: 669  QTPQPEDENTPXKRVDKI 722
                PE+ ++  + +  +
Sbjct: 1755 SDGHPENSDSVLETISSV 1772


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 489 ENNDGSIEFEEFIRALSVTSRGNLDEKLH---WAFRLYDVDNDGYITRDEMYNIVDAIYQ 659
           ++ + S+ F+  I  L    R   D  LH     F+LYD+  DG +  +E+  + +++  
Sbjct: 592 DSTETSLTFKRIIHGLE---RLKADIALHSEILCFQLYDLKRDGTLRTEEVVELSESLIL 648

Query: 660 MVGQTPQPEDE 692
           +       +DE
Sbjct: 649 LCCYEGDEKDE 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,797
Number of Sequences: 5004
Number of extensions: 55325
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)