Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N15
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              29   0.045
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 29.1 bits (62), Expect = 0.045
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
 Frame = +3

Query: 375 KDCPNG---LLTEQGFIKIYKQFFPQGDPSK--FASLVFRVFDENNDGSIEFEEFIRALS 539
           K+C N    ++ +   +  + +   Q + SK    S++F  +D NN+G++E EE  +   
Sbjct: 204 KECSNQEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAE 263

Query: 540 VTSRGNLDE--KLHWAFRLYDVDNDGYITRDEMYNIVDAIYQM 662
                 L     L       D D DG +  +E Y     +Y +
Sbjct: 264 NEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSKLYSV 306


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 254 DFATENGQ--EELEIEARHDRQTDERHLLYGKRNSALAQRISEGLP 385
           D    NG+  E +  +  H ++TD+    YG R S   +  + GLP
Sbjct: 404 DVEAANGKPAEGMLTDVFHVQETDKYDAYYGNRFSGEYEIPAHGLP 449


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 521 FFELNRPVIVFVEHS 477
           FF+L RP+I F  HS
Sbjct: 246 FFDLVRPLIAFKFHS 260


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 535 RARMNSSNSIDPSLFSSNT 479
           +AR+N ++S+ PSL S ++
Sbjct: 270 KARLNPNSSLQPSLASHHS 288


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 272 HFRSRSRDDGLHSLRVVRGRHXSVTYLLHIXRPE 171
           +FR   RD  L  L  ++    S+  L  I RP+
Sbjct: 88  YFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPD 121


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 535 RARMNSSNSIDPSLFSSNTLNT 470
           R  +NS + +DP +  SN L T
Sbjct: 461 RITLNSKDPLDPPVIWSNDLAT 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,013
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)