Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N12
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    28   4.5  
09_02_0171 - 5294555-5294572,5294815-5294839,5295484-5295526,529...    28   4.5  
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907...    28   6.0  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    27   7.9  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    27   7.9  

>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 182 RLLQPYIKCILDTDRCAPDAKELKEHIREALE 277
           ++LQ     I D  RCAPD   L +H+ EAL+
Sbjct: 295 KVLQELAVSIRDHHRCAPDV--LSDHLHEALQ 324


>09_02_0171 -
           5294555-5294572,5294815-5294839,5295484-5295526,
           5296388-5296651,5296941-5297019,5297653-5297727
          Length = 167

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 137 DRYDNVNLDEVLSNSRLLQPYIKCILDTDRCAPDAKELKEHIREALETEC 286
           DR D  +L  VL   R   P+   I+DT     + KE +E  R+ +E EC
Sbjct: 71  DRMDVTDLTTVL---RKKMPHTYIIIDTVTQVDEKKEKEEKDRKKMEEEC 117


>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
            16090771-16090974,16091403-16091504,16091710-16091741,
            16092668-16093655,16094461-16094711,16095786-16097795,
            16097903-16097954
          Length = 1347

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 279  PNARNVPKPRRRVL 320
            P A NVP+PRRRVL
Sbjct: 1013 PGAANVPRPRRRVL 1026


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -1

Query: 128 CRQXWREPRPKRQ-----TGENAMREFILMVC 48
           C + W EP PK+Q     TG   ++EF L+VC
Sbjct: 804 CLEIWLEPNPKKQLTVQSTGFPCLKEF-LLVC 834


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 220 GQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPSN 342
           G VC      EG  + G R R RE+     E YS C RPS+
Sbjct: 221 GSVCVAERRREGRGEEGRR-RSRELMEMEMEMYSRCARPSH 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,640
Number of Sequences: 37544
Number of extensions: 241588
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)