Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N09
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   8.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 652 WTQRLGVMCQILTQSCQPHYCI-LW 723
           W+  LG +C + +  C P Y I +W
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 652 WTQRLGVMCQILTQSCQPHYCI-LW 723
           W+  LG +C + +  C P Y I +W
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYIW 604


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 704 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 817
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 624 ARVFQSLIVLSREPDTI*RLSTEKATESTSSD 529
           A + Q+L  L R PDT+ +++  + T   + D
Sbjct: 886 ANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPD 917


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -1

Query: 586 TRHYLTVVN*EGYREYILRLL 524
           +++Y+T+++  G+R++I  ++
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMI 30


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 282
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 282
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 282
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -1

Query: 586 TRHYLTVVN*EGYREYILRLL 524
           +++Y+T+++  G+R++I  ++
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMI 46


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -1

Query: 586 TRHYLTVVN*EGYREYILRLL 524
           +++Y+T+++  G+R++I  ++
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMI 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,188
Number of Sequences: 438
Number of extensions: 5804
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)