Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N07
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     51   2e-07
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.1  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    27   4.0  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    27   4.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   5.4  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   7.1  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +3

Query: 606 EYLKKNGRSMFDITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYR 776
           ++L+   +  F I    SVS W+HLNN D G+ +F   I ++ ++   +I+EPQ W  Y 
Sbjct: 137 DFLRWESKRKFKIILALSVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQGWDSYL 196

Query: 777 QAXK 788
           +A K
Sbjct: 197 KAAK 200



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +3

Query: 303 GNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYKLLKNLYPQCML 482
           GN+ +YYS       I+     +  +L  +   LDIGCN G ++ ++  +    +     
Sbjct: 7   GNYHSYYSMRGGTSIIDPRLKCLPDSLFYEASVLDIGCNNGTVSAQIASIFGASF----- 61

Query: 483 HILAVDIDSVLINRAQE 533
            +L +DID VLI +A++
Sbjct: 62  -VLGLDIDHVLIQKARK 77


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 288 GAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIG 413
           G +   N +N+YSF ++AE I  +  +  P   ED + ++ G
Sbjct: 184 GVLNVMNRLNFYSFGHIAENIGAIFESP-PVYVEDPFIVEDG 224


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 375 PTLTEDIYCLDIGCNTGDLTRELYKL-LKNLYPQCMLHILAVDIDSVLINRAQESNT 542
           P L  D   LD+GC TG L+    +   K++Y   M  I+   +  V +N+  +  T
Sbjct: 50  PHLFRDKIVLDVGCGTGILSMFCARAGAKHVYGVDMSEIIHKAVQIVEVNKLSDRIT 106


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 454 NSLYNSLVRSPVLQPMSRQYISSVKVGNIFGCKLFILSATL*NE**FIKFPNLTAPGSLP 275
           ++L+N+L++SP L  ++ ++  S+K G I      I+            F  +  PGSLP
Sbjct: 72  SALFNALLQSPYLAALANEFNRSIKEGIICNFTRSIID----------PFSRIVLPGSLP 121


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +3

Query: 489 LAVDIDSVLINRAQESNTERNIEYTTANVMAKSDRDSINE 608
           L++D+   ++NR+  +N+++N + T    + +S  +S+ E
Sbjct: 286 LSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSINSVKE 325


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 507 SQCQRPICATCIEDKGFLIVY 445
           + C+RP C TC  D  F  +Y
Sbjct: 181 TDCKRPTCMTCAIDDMFSSIY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,264
Number of Sequences: 5004
Number of extensions: 70615
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)