Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N07
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591...    46   5e-05
06_01_0180 - 1397432-1399969                                           29   5.6  
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039...    28   7.4  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    28   7.4  
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    28   9.7  
02_01_0408 - 2972240-2975380                                           28   9.7  

>08_02_1431 +
           27057706-27057900,27058701-27058815,27059123-27059170,
           27059272-27059524,27059689-27059776,27059883-27059948,
           27060335-27060403,27060492-27060597,27060639-27060793,
           27061208-27061537
          Length = 474

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 636 FDITFCFSVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQ 779
           +D   C SV+ WIHLN GD+G+      I  + +     I+EPQPW  YR+
Sbjct: 199 YDTIVCLSVTKWIHLNWGDDGIITLFVKIWRLLRPGGVFIMEPQPWTSYRR 249



 Score = 36.7 bits (81), Expect = 0.021
 Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = +3

Query: 300 FGNFINYYSFH---NVAE--RINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYKLLKNL 464
           +GN+ NYY +    NV E  R+       F    E   CLDIGCN G +T  L    K  
Sbjct: 55  YGNYRNYYGYRIDRNVDEDPRLKIFKREWF----ESKDCLDIGCNQGLVTIGLAAKFK-- 108

Query: 465 YPQCMLHILAVDIDSVLINRAQES--NTERNIEYTTANVMAKSDRDSINE 608
              C   IL VDIDS LI  A  +     R  +    N  A    DS +E
Sbjct: 109 ---CQ-SILGVDIDSGLIETANWNLRRMSRLDKVVVENTKAHKSSDSPSE 154


>06_01_0180 - 1397432-1399969
          Length = 845

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 300 FGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYK 449
           FG  +  +    V++ +N+L+ N+F    + I  LD+   TG+L+   YK
Sbjct: 315 FGYLVRLFFADIVSKSMNDLYFNVFVNGRKAISGLDLSTVTGELSAAYYK 364


>05_07_0132 +
           27903236-27903376,27903498-27903659,27903755-27903903,
           27903999-27904325,27905123-27905323,27906095-27906155,
           27906517-27906718,27906899-27907020,27907143-27907247,
           27907369-27907452
          Length = 517

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 520 TVLKSLTPNETLNTQPQMSWQKVIVIQSMNISRKMVDQCLISHFVFLYQCGFI 678
           T+L  LTP +  ++ P    Q   ++Q + ++ K+  Q  +  F+     GF+
Sbjct: 18  TILSLLTPTQCASSSPDSLNQSYKIVQPLELTPKLSLQLKLHAFLLWSSVGFL 70


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 675 HLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYR 776
           H  + ++ L E   HI+ +++ II+E + WK ++
Sbjct: 305 HAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKKWK 338


>02_05_1142 -
           34391144-34391590,34391715-34391904,34392058-34392128,
           34392403-34392515,34392656-34392749,34392843-34392908,
           34393120-34393282,34393441-34393547,34393918-34394115,
           34394204-34394329,34394800-34394904,34395056-34395098,
           34395334-34395391,34395479-34395659,34395751-34395917,
           34396010-34396249,34396341-34396781,34397147-34397272,
           34397457-34397561,34397935-34398002,34398169-34398272,
           34398856-34399008,34399472-34399570,34399919-34400046,
           34400149-34400300,34400423-34400502
          Length = 1274

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 DLDYYGSDP-GAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIG 413
           ++ Y   +P  A  FG      +       I    PN+ P++  DIY L +G
Sbjct: 699 EVSYISDEPVAAASFGQVYQGRTVDGALVAIKVQRPNLLPSVLRDIYILRLG 750


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 282  DPGAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLD 407
            DP     GN         VA +  N +P M PT+TE + CLD
Sbjct: 1000 DPTLQGTGNEEQMLKVLEVACKCVNCNPCMRPTITEVVSCLD 1041


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,252,463
Number of Sequences: 37544
Number of extensions: 381788
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)