Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N07
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    44   2e-04
AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical...    43   3e-04
AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical...    43   3e-04
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    33   0.31 
Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical...    31   0.71 
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75543-3|CAA99877.1|  276|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine r...    29   5.0  
U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine rece...    28   6.6  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    28   6.6  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    28   8.8  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    28   8.8  
AC006776-6|AAF60624.1|  356|Caenorhabditis elegans Serpentine re...    28   8.8  
AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine re...    28   8.8  

>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
            protein Y47D3A.29 protein.
          Length = 1428

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = +3

Query: 408  IGCNTGDLTRELYKLLKNLYPQCMLHILAVDIDSVL--INRAQESNTERNIEYTTANVMA 581
            I C+TG L RE     K L+ Q M     +D+D+ +  ++ AQ+   +  +EY    + +
Sbjct: 1338 IRCSTGVLRREYTS--KQLFDQQMFFRTILDVDAAVRKLSDAQKKAAKVRVEYNGCKIDS 1395

Query: 582  KSDRDSINE-YLKKNGRSMFDITFCFSVSMWI 674
                D INE YL+KN  +  D+++ F+  M I
Sbjct: 1396 MMLADRINEKYLEKNAYNRVDLSYIFAPMMKI 1427


>AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18b protein.
          Length = 381

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 636 FDITFCFSVSMWIHLNNGDNGLREFLEHIKT---ISKSIIIEPQPWKCYRQAXK 788
           FD+    S++ WIHLN GD+G+R F             +IIEPQ +  Y++  K
Sbjct: 260 FDVILALSITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAK 313



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 297 KFGNFINYYSFH-NVAERINNLHPNMFPT-LTEDIYCLDIGCNTGDLTRELYKLLKNLYP 470
           ++GNF  YY    N  E    L  ++F     E    LDIGCN G LT     + K+  P
Sbjct: 121 RYGNFDRYYGIRLNPGESDKRL--SVFQKDWFEHKQALDIGCNAGFLT---LSIAKDFSP 175

Query: 471 QCMLHILAVDIDSVLINRAQES 536
           +    I+ +DID  LI  A+++
Sbjct: 176 R---RIIGIDIDEHLIGVARKN 194


>AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18a protein.
          Length = 378

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 636 FDITFCFSVSMWIHLNNGDNGLREFLEHIKT---ISKSIIIEPQPWKCYRQAXK 788
           FD+    S++ WIHLN GD+G+R F             +IIEPQ +  Y++  K
Sbjct: 257 FDVILALSITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAK 310



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 297 KFGNFINYYSFH-NVAERINNLHPNMFPT-LTEDIYCLDIGCNTGDLTRELYKLLKNLYP 470
           ++GNF  YY    N  E    L  ++F     E    LDIGCN G LT     + K+  P
Sbjct: 118 RYGNFDRYYGIRLNPGESDKRL--SVFQKDWFEHKQALDIGCNAGFLT---LSIAKDFSP 172

Query: 471 QCMLHILAVDIDSVLINRAQES 536
           +    I+ +DID  LI  A+++
Sbjct: 173 R---RIIGIDIDEHLIGVARKN 191


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 356 IVYSLSHVMK*IVVYKISKFNSPRITTIIVQIFSSFFHFYFPCCKCKYXRLFCNQRATG 180
           I+Y L+  M   V  K SKF    +  ++VQ     F  +FPC  C Y  +F  Q + G
Sbjct: 221 IMYKLNK-MSVNVSKKTSKFQFELLRALVVQTVVPIFISFFPCLLCWYSPMFGIQLSRG 278


>Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 321 YSFHNVAERIN--NLHPNMFPTLTEDIYCLDIGCNTGDLTRELYK 449
           YS +N  +  N  NLHP+   T+TE +  L++G +T ++  +L K
Sbjct: 317 YSTYNKRQYFNFENLHPDFCVTITEIVALLNLGISTENIEAKLCK 361


>AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 321 YSFHNVAERIN--NLHPNMFPTLTEDIYCLDIGCNTGDLTRELYK 449
           YS +N  +  N  NLHP+   T+TE +  L++G +T ++  +L K
Sbjct: 317 YSTYNKRQYFNFENLHPDFCVTITEIVALLNLGISTENIEAKLCK 361


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = -3

Query: 652 QNVISNIDLPFFLRYSLIESRSLFAMTFAVVYSM-----FRSVLDS*ARFMSTESMSTAN 488
           QN++   D+ +F+ + L     ++ M+  ++ S         +L S A F+++ + +   
Sbjct: 442 QNIVGPKDICYFISWYLATDLQIYIMSPLILLSFGLGGAVVGLLISTAAFLASTAFNAYQ 501

Query: 487 MCNMH*G*RFFNSLYNSLVRSPVLQPMSRQYISSVKVGNIFGCKLFILSATL 332
           M   H    F  S YN   + P+  P  R+Y +      +  C+++I+   L
Sbjct: 502 MIFWH----FPPSDYNYGPKDPLYDPSKRRYAAWNYHNPLIRCQIYIMGMVL 549


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 621 NGRSMFDITFCFSVSMWI-HLNNGDNGLREFLEHIKTISKSIII 749
           NG  +   +F F++S W+    NGD   RE LE+     K++I+
Sbjct: 512 NGNFLLSTSFTFTISNWLDDATNGDE-FRENLEYSLNFIKNVIL 554


>Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical
           protein ZK909.2c protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 463 FILNACCTYWPLTLTQYS*TVLKSLTPNETLNTQPQM 573
           FIL+  C   PL +T  +     +LTP+ T  T P M
Sbjct: 31  FILHPLCRTGPLQMTVKASNSTTTLTPSSTTTTSPSM 67


>Z75543-3|CAA99877.1|  276|Caenorhabditis elegans Hypothetical
           protein K01D12.3 protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 234 EVKMKERTKDLDYYGSDPGAV 296
           EVK+KE    +D++G+DP AV
Sbjct: 97  EVKLKELYPKIDFFGADPAAV 117


>AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical
           protein H14E04.1 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 342 ERINNLHPNMFPTL--TEDIYCLDIGCNTGDLTREL 443
           E + +LH ++   L  +E+++CLDIGC  G +  ++
Sbjct: 78  EALKSLHCHIAEKLELSENVHCLDIGCGIGGVMLDI 113


>AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein57 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 311 KISKFNSPRITTIIVQIFSSFFHFYFPCCKCKYXRLFCNQRATG 180
           + SKF    +  +IVQ     F  + PC  C Y  +F  Q A G
Sbjct: 235 RTSKFQLELLRALIVQTVIPIFISFSPCLLCWYSPMFGIQLARG 278


>U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein11 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 569 CGCVFNVSFGVRLLSTVYEY*VNVNGQYVQHALR 468
           CGC+ ++S+G+ ++  +Y Y V  N + +   LR
Sbjct: 96  CGCI-SLSYGILVIHFIYRYLVLFNTRIIDRLLR 128


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 646 VISNIDLPFFLRYSLIESRSLFAMTFAVVY-SMFRSVLDS*ARFMSTESM 500
           ++  + L   L+YS +   +LFA+TFA V+ S+  SV  S  R  +T +M
Sbjct: 439 MVPGVFLNVVLKYSSMYDTNLFAITFAAVFASLVFSVFFSIWRSKTTPAM 488


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 507 SQCQRPICATCIEDKGFLIVYTILL*DLQYCNQCPGNI 394
           S C+R    TC + KG L     +  +++YC  C  ++
Sbjct: 149 STCKRSFHVTCAQRKGLLCEEGAISRNVKYCGYCENHL 186


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 507 SQCQRPICATCIEDKGFLIVYTILL*DLQYCNQCPGNI 394
           S C+R    TC + KG L     +  +++YC  C  ++
Sbjct: 149 STCKRSFHVTCAQRKGLLCEEGAISRNVKYCGYCENHL 186


>AC006776-6|AAF60624.1|  356|Caenorhabditis elegans Serpentine
           receptor, class w protein99 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 478 CCTYWPLTLTQYS*TVLKSLTPNETLNTQPQMSWQKVIVIQSMNISRKMVDQ 633
           C ++  + L      +LKSLT       +P++ W+  IV+Q ++ +  +V Q
Sbjct: 111 CSSWLGVLLASVRYVILKSLTDRSKF-AKPKVGWKLFIVVQCVSATLSLVYQ 161


>AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine
           receptor, class w protein90 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 567 ANVMAKSDRDSINEYLKKNGRSMFDITFCFSVSMWIHLNNGDNGL 701
           ++V  + +R S  +Y  K   + F I+F F++S ++H+ N   G+
Sbjct: 135 SDVTNRKNRYSTQKYGVKVTLTAFFISFAFTISFYLHVENVQIGV 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,919,283
Number of Sequences: 27780
Number of extensions: 390984
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)