Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_N01
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.8  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   4.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   6.4  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   8.5  

>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 280 KVWSELQSPQVGAVNFFTGMGGF--LQTLIFGYAGIRIHLDRIEITRPQ-LPPETKEFKI 450
           K+WS+L   + G ++F     GF     L+F    ++  +    I  P+ +P    +  +
Sbjct: 234 KIWSKLSKVRHGRIDFVLDNAGFELFVDLLFATYLLKTEIAETIILHPKDVPWFVSDVLV 293

Query: 451 KGIKYLGSSLSMHIQATSVTLTVSSV 528
             I +L +SL+ +     V    S +
Sbjct: 294 NDIPHLFNSLTSYFSGEGVQKLASDL 319


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 268  REPFKVWSELQSPQVGAVNFFTGMGGFLQTLIFG-YAGI 381
            ++ F + +E + P +G + F +GM G L T + G YAG+
Sbjct: 1007 QKEFVIGNE-EKPIIGGIEFSSGM-GLLHTALLGVYAGV 1043


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +1

Query: 292 ELQSPQVGAVNFFTGMGGFLQTLIFGYAGIRIHLDRIEITRPQLPP 429
           E+    V A+      GG + T+ F    +R HL       P  PP
Sbjct: 130 EVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSFRTPPRPP 175


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 168 SSYDLEYACYRILGRRRQSKGW 233
           SS+D++  C+ ++ RR  S  W
Sbjct: 795 SSFDIQQGCFNVIKRRLSSYKW 816


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 638 GTARIVEIPSLGSVTVMPGVSVTLYLPSFMTNGHWSCTDDTVSVT 504
           GT  +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 223 GTVEVV-IPTAGTVTETAVSGSELYTSTFPANGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 638 GTARIVEIPSLGSVTVMPGVSVTLYLPSFMTNGHWSCTDDTVSVT 504
           GT  +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 363 GTVEVV-IPTAGTVTETEISGSELYTSTFPANGTTSGTVEVVIPT 406


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 418 QLPPETKEFKIKGIKYL 468
           Q PPE  E KIK  KYL
Sbjct: 174 QAPPELPELKIKETKYL 190


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 318 STDLGALQLTPDFKRFSDVFLVALAEHGSSL 226
           +T+L +L+   D K F D FL A+  HG  +
Sbjct: 337 NTELVSLKEDADEKTFLDTFLNAIEGHGKKI 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,250
Number of Sequences: 5004
Number of extensions: 69253
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)