Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_N01
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0001 - 12066231-12066341,12066745-12066825,12067056-120671... 35 0.058
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 29 2.9
08_01_0628 - 5460030-5462960 29 5.1
01_01_0356 - 2814175-2815401 25 7.7
06_02_0172 + 12594542-12596083 28 8.8
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 28 8.8
>12_02_0001 - 12066231-12066341,12066745-12066825,12067056-12067136,
12068017-12068097,12068337-12068417,12068492-12068572,
12068647-12068727,12070748-12070828,12070903-12070983,
12071551-12071631,12072036-12072116,12072519-12072599,
12072839-12072919,12073468-12073548,12074108-12074188,
12074428-12074508,12075076-12075156,12075396-12075476,
12075561-12075641,12076356-12076436,12076676-12076756,
12077326-12077406,12077811-12077891,12078131-12078211,
12078286-12078366,12079586-12079666,12079906-12079986,
12081341-12081421,12081793-12081873,12083074-12083154,
12083714-12083794,12084034-12084114,12084354-12084434,
12084674-12084754,12084829-12084909,12084984-12085064,
12085304-12085384,12087109-12087189,12087429-12087509,
12087584-12087664,12089204-12089284,12090339-12090419,
12090659-12090739,12091621-12091701,12092754-12092834,
12093074-12093154,12093155-12093310,12093550-12093630,
12094454-12094512,12094610-12094691,12096312-12096392,
12096789-12096869,12097768-12097907,12099296-12099377,
12100185-12100265,12100999-12101079,12101484-12101564,
12101814-12101894,12102628-12102708,12103744-12103824,
12104869-12104949,12105189-12105269,12105509-12105589,
12106322-12106402,12106477-12106557,12107448-12107528,
12108050-12108145,12109578-12109584,12110097-12110293
Length = 1929
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 232 GAMFSESYQKYVREPFKVWSELQSPQVGAVNFFTGMGGFL--QTLIFGYAGI 381
GAMF +K+ + K++ + VGA+ FFTGM F Q +IFG+ G+
Sbjct: 1463 GAMFFTGMKKFNKHQNKIFGHIGVYWVGAI-FFTGMKKFKKHQNIIFGHIGV 1513
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 223 AKAGAMFSESYQKYVREPFKVWSELQSPQVGAVNFFTGMGGF--LQTLIFGYAGI 381
A+ GAMF +K+ + ++ + VGA+ FFTGM F Q +IFG+ G+
Sbjct: 677 AQVGAMFFTGMKKFKKHQNMIYGHIGVYWVGAM-FFTGMKKFNKHQNMIFGHIGV 730
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 232 GAMFSESYQKYVREPFKVWSELQSPQVGAVNFFTGMGGFL--QTLIFGYAGI 381
GAMF +K+ + K++ + VGA+ FFTGM F Q +I+G+ G+
Sbjct: 869 GAMFFTGMKKFKKHQNKIFGHIGEYWVGAM-FFTGMKKFKKHQNMIYGHIGV 919
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -2
Query: 235 LQPLLCLLRPSIL*HAYSKS*LDQTSS*LIHNNQCRF--FSSSYSFCT 98
L+ LC + ++ H+Y K+ L+ T + +N+ CRF F+S SFCT
Sbjct: 186 LESYLCRI---VVRHSYGKTSLEVTVT--FYNHDCRFAKFNSPSSFCT 228
>08_01_0628 - 5460030-5462960
Length = 976
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +3
Query: 393 GQDRDYKAATATRNERI*NKRY*IFRIESVD--AYPGDQR---HADGVVGTRPVAVSHE 554
G D DY + A ER+ NKRY I + D + G +R DGV G+R V + +
Sbjct: 290 GGDTDYGSLVAALRERLANKRYLIVLDDVWDETLWDGLERAMPDGDGVAGSRVVITTRK 348
>01_01_0356 - 2814175-2815401
Length = 408
Score = 25.0 bits (52), Expect(2) = 7.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 539 HWSCTDDTVSVT 504
HW CTDD S T
Sbjct: 227 HWLCTDDVASAT 238
Score = 21.4 bits (43), Expect(2) = 7.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 599 VTVMPGVSVTLYLPSFMTNGHWS 531
VT S+T+Y+ S+ G W+
Sbjct: 176 VTTKHANSITMYVNSYSAAGGWA 198
>06_02_0172 + 12594542-12596083
Length = 513
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +3
Query: 147 ISYEEVWSSYDLEYACYRILGRRRQSKGWSHVQRELPEI 263
+ E+ S Y C+ + G+ +GW+ + REL ++
Sbjct: 175 VDLTEMLSCYSNNIVCHAVCGKFSLKEGWNQLLRELVKV 213
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 27.9 bits (59), Expect = 8.8
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +1
Query: 415 PQLPPETKEFKIKG--IKYLGSSLSMHIQATSVTLTVSSVHDQWPLVMNDGRYNVTLTPG 588
P PPE K+ + + S LS T+V LTVS+ H P +N+G + V+
Sbjct: 122 PSSPPEGDLEKLTAAPLPSVVSPLSPSAPNTAVALTVSTSHGSVPSSLNEG-HGVS---- 176
Query: 589 MTVTLPKDGISTIRAVPWKDCK-LPADIIGQN 681
+ PK+ T P C+ LP ++ N
Sbjct: 177 SKIAAPKEEHVTPTMDPPSRCEHLPLEVAPSN 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,915,776
Number of Sequences: 37544
Number of extensions: 461829
Number of successful extensions: 1131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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