Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_M21
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 203 2e-53
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 203 2e-53
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.64
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.84
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 1.5
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 4.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.9
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.9
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 203 bits (496), Expect = 2e-53
Identities = 91/158 (57%), Positives = 120/158 (75%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 223
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 224 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 403
R+RK A+R GRH G+GKR+GTA ARMP +W + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 404 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 517
H+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 203 bits (496), Expect = 2e-53
Identities = 91/158 (57%), Positives = 120/158 (75%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 223
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 224 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 403
R+RK A+R GRH G+GKR+GTA ARMP +W + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 404 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 517
H+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 187 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 98
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 166 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 71
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 222 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 320
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 14 LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 172
+V VG + ++ S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 26 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 139
G +++ K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 483 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 391
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 622 FVFXSEGLQQFLLLGGNTFLAALACLLHFIAA 527
+V E +FLLLG F A + LLH +++
Sbjct: 50 YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,540
Number of Sequences: 5004
Number of extensions: 52460
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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