Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M19
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.57 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   1.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    28   1.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.0  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   4.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   4.0  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   5.3  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   7.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.3  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 200 FSTFPSDDELYCARFTITPLTPD 132
           FSTF  DD  Y +RF+  P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 424 RRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRT 540
           +R+    + C+ CK C+   P Q I  +  +  DG + T
Sbjct: 592 KRFVINSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPKYT 630


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 553 IDMTKCIYCGFCQEACPVDAI 615
           I  T CI CG C + CP  AI
Sbjct: 50  ISETLCIGCGICVKKCPFGAI 70



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 442 EERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 567
           E  CI C +C   CP  AI I        S  T RY  +  K
Sbjct: 52  ETLCIGCGICVKKCPFGAINIINLPTNLESEVTHRYSANSFK 93


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 358 ATINYPFEKGPLSPRFRGEHALRRYPS 438
           +T  +P+ KG    RF   H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 617 WKVRISSFQQRHTRNFCTIRRNFCRTAINGRVRSHPTSELIICTVELLCS 766
           W V+  SF    T+    I +    T I   V+ HP  E ++ +V   C+
Sbjct: 210 WDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHEALLASVSDDCT 259


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 534 PRTVLTLFCFNRDSLCWT 481
           P+  L L C  RD LCWT
Sbjct: 604 PKIELLLPCSGRDDLCWT 621


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 724 WMRSHSPIYRRSTEVSPYCTKVPRVSLLKTRNSDLPRLHQPD 599
           W++ HSP YR ST  +    + P  S L    S+  +   PD
Sbjct: 98  WLQRHSPAYRFSTPAAKRPRRQPS-SFLDVHASNTRKRGSPD 138


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 712 HSPIYRRSTEVSPYCTKVPRVSLLKTRNSDLPRLHQPDRLLDRSHN 575
           H  + + S E  P  T VP+  L+   NSD   L   +RL++R  N
Sbjct: 37  HKRLTKCSGERDP-ATFVPKSKLVNHLNSDFNFLSGVERLINRKEN 81


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 613 IVEGPNFEFSTETHEELLYNKEKLLSNG 696
           I E  NF  ST+     + N +KL SNG
Sbjct: 646 IAEFKNFRLSTDISHSNVRNSKKLCSNG 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,996
Number of Sequences: 5004
Number of extensions: 66203
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)