Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M19
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.79 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +2

Query: 395 RLGSEVNMLYVATLQEKKGALLVSSVKPFVQHRLSRLKQKSVRTVRGEPLDTILT*QSVS 574
           RL  E N L   TLQE   A      K + ++++  L + +   V  +  D ++   S +
Sbjct: 381 RLMDETNQL---TLQETADAFKDLQDKYYEEYKMYELGELASSFVGPKVKDCLI---SWN 434

Query: 575 IVASVKKPVRLMQSWKVRISS 637
            +   K+P++L + WK  + S
Sbjct: 435 PLMQPKQPIKLFEQWKSILES 455


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 469 CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFC 588
           CE +     IT +  +     +RT   DI +TKC   GFC
Sbjct: 36  CETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCE--GFC 73


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 469 CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFC 588
           CE +     IT +  +     +RT   DI +TKC   GFC
Sbjct: 36  CETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCE--GFC 73


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 579 TIDTLCHVNIVSSG 538
           T DT+C +NIV  G
Sbjct: 502 TYDTICQLNIVHYG 515


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 325 AVTLAHIFKEPATINYPFEKGP 390
           A  L  +FKE  T N  FE+ P
Sbjct: 99  ADALPKLFKEWGTTNLTFEEDP 120


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 557 SISYRVVRLEPSLRSSASIVIAC 489
           +++ R+  +  ++  SAS+ IAC
Sbjct: 874 NVALRITSMSVTISLSASVTIAC 896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,877
Number of Sequences: 438
Number of extensions: 4607
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)