Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M15
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128...    31   1.1  
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426...    31   1.1  
11_06_0743 + 26847652-26849424                                         30   2.0  
11_04_0167 + 14382976-14385244,14389373-14389842                       30   2.0  
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862...    29   3.5  
06_03_1188 + 28269231-28270358                                         29   6.1  
03_02_0992 + 13049871-13050449                                         29   6.1  
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    28   8.0  

>10_08_0738 -
           20212220-20212282,20212387-20212593,20212690-20212819,
           20212919-20213089,20213311-20213433,20213517-20213618,
           20214123-20214880
          Length = 517

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 662 SPPRRHTRPIPVPPPEGRRMATVTSHHRSSQ 754
           SPPRR   P P PPP   R A    H R  +
Sbjct: 18  SPPRRQPHPPPPPPPPLPRHALHRQHEREGE 48


>03_01_0577 +
           4261249-4262055,4262149-4262203,4262293-4262468,
           4262554-4262718,4262811-4263178,4263225-4263861,
           4263952-4265844,4266325-4266672
          Length = 1482

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 514 ACGTSVVKVAHQMISSRSPRGFTVASPSEDATAPDPQHYNLMARRGSKS 660
           A G +VV +AH++ + R+    T+A     A     +H +LMARRG  S
Sbjct: 790 AAGRTVVVIAHRLATVRNAD--TIAVLDRGAVVESGRHADLMARRGPYS 836


>11_06_0743 + 26847652-26849424
          Length = 590

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 711 PSGGGTGMGRVCRRG-GETLAAST 643
           P+GGG G GR CR G G+ +A ST
Sbjct: 447 PAGGGRGRGRRCRGGLGDEVARST 470


>11_04_0167 + 14382976-14385244,14389373-14389842
          Length = 912

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 506 SPLKPS--SVPAGFGFVTEFTAVLIGAMPWSTSWHGLVCFDQSFSLTTLN 363
           SPL  +   V  GFG+  E      G  P S +W G+VC     S+  L+
Sbjct: 324 SPLTTTLLQVAEGFGYPYELAKTWKGNDPCSPAWVGIVCTSSDVSMINLS 373


>05_07_0141 -
           27985539-27985609,27985692-27985749,27986249-27986296,
           27986455-27986517,27986599-27986722,27990021-27990358
          Length = 233

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 493 GFKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDAT 609
           GF+  G A G  VV    +M  + S  G+    PS+D T
Sbjct: 85  GFRRAGVAVGEGVVGARRRMRGAASTVGYMSGKPSDDTT 123


>06_03_1188 + 28269231-28270358
          Length = 375

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 115 CYLPVALTIYLKLDPEIKDGFTLPVWM-KTKPTKEFEPFAGSPPPP 249
           C   + L++ + + P + DG T+P  + + +  +E E +AG  PPP
Sbjct: 5   CEAGLPLSVAVSVPPVMVDGETVPKEVEECEDEEEEEEYAGDAPPP 50


>03_02_0992 + 13049871-13050449
          Length = 192

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 641 RVEAARVSPPRRHTRPIPVPPPEGRRMATVTSHHRSSQQKTRLTDRGCR 787
           R+    V PP RH R +P PP  GR +A+ TS    +   T L   G R
Sbjct: 71  RIGRGGVLPPHRHRRSVP-PPSLGRGVAS-TSPPLHAATVTPLRPAGSR 117


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 34  YRTYRSHLIV*EAYEASWT 90
           YR++R H+I  EA  ASWT
Sbjct: 224 YRSHRKHMIAREAEAASWT 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,842,247
Number of Sequences: 37544
Number of extensions: 556078
Number of successful extensions: 2691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2673
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)