Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_M14
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 27 2.4
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.4
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.2
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 5.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 7.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 7.3
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 9.6
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa... 25 9.6
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.6
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 290 REVIMLYAWCVLACVTAADAL 352
R +M Y WCV CVTAA+++
Sbjct: 100 RRRLMAY-WCVYGCVTAAESI 119
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -3
Query: 640 VSVGAADDHIILVVDYAKALLQPSYYLFPNS-MSHHRSINRHEDQSFNSVPTVIFYHEGP 464
VS+ + D IL V+ +LQ SY+ PNS ++ H+D + + V+ G
Sbjct: 654 VSLFSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTHKDDEWKNFELVVVESSGE 713
Query: 463 *ELTQVNSMPDLLELSISHKSNFSR-WASDVSYASPDTQRI 344
++ + + ++++ K S +S SP RI
Sbjct: 714 IQVFSLTIEIEGADIALVEKFQLSSPIIKSISIVSPTANRI 754
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/80 (18%), Positives = 32/80 (40%)
Frame = -3
Query: 568 YYLFPNSMSHHRSINRHEDQSFNSVPTVIFYHEGP*ELTQVNSMPDLLELSISHKSNFSR 389
YY N + + + ED+ S P + L +++ LL+ ++S +
Sbjct: 214 YYTLENDSENINEVKKFEDEEDTSTPNTSSFQNNSSSLDLSDNLSYLLQYLEGNRSKINA 273
Query: 388 WASDVSYASPDTQRIRRRHA 329
+DV D ++ + + A
Sbjct: 274 TDADVKQLLSDVKKNKSKWA 293
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 292 SSKLCSCYLSKTSENNYVCNNVPLISHFTAKTTFTNRQRKQQH*KTTSPTVL 137
SS C LS++S NN V +F + N + QH T+ P+VL
Sbjct: 19 SSNFCFRNLSQSSNNN-VSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVL 69
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 521 SVDAAMMGHGVRKEVIRRLQKRFGVIYNEDNVIISGT-HTHSTPGGFLMDFLFDL 682
+VDA+ + +G ++ + IYN + S H STPG +FLFD+
Sbjct: 384 AVDASSLSNGWKELFVNANDGSNEGIYNTEYPFFSVQFHPESTPGPRDTEFLFDV 438
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 226 GRYYIHNCFLKFWINNKNKASKR--SYNVIRVVRACVRDGGGCAAC 357
GRYY + C K W ++ NK+S + R+ R D C C
Sbjct: 205 GRYYCNKC--KLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTC 248
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 7.3
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Frame = -3
Query: 661 QESSRSGVSVGAADDHIILVVDYAKALLQPSYYLFPNSM---SHHRSINRHEDQSFNSVP 491
+E+ SV D L+ D ++ P+ + + +SM S + + S SVP
Sbjct: 368 EEAYAEATSVVLRDLEAALLRDVKSKIIGPAIFKYLHSMPKPSVKEELQENLLVSSTSVP 427
Query: 490 TVIFYHEGP*ELTQVNSMPDLLELSISHKSNFSRWASDVSYASPDTQRIRRRHARKHAPR 311
V E + ++ S+P + S K N S S +++RR R+H R
Sbjct: 428 DVPLKIEST--VGKLPSLPKFKKRVDSSKMNLSA-------GSKTKSKLQRRRRRRHEAR 478
Query: 310 V*HYNFS 290
HY +
Sbjct: 479 PLHYQLN 485
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -3
Query: 409 HKSNFSRWASDVSYASPDTQRIRRRHARKHAPRV*HYNFSSKLCSCYLSKTSENNYVCNN 230
H +R+ +D + S D R ++R R+H P + SS + S SEN+++ +
Sbjct: 328 HHQQDTRFVNDPNSTSHD--RRQKRPTRRHIPCSNKSSGSSTVLGNNSSSKSENSFLASL 385
Query: 229 VPLISHFTAKTTFTNRQRKQQH 164
+ I+ + T+ QH
Sbjct: 386 ISNINQPSTSRIDTSFMLSLQH 407
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 509 LVFVSVDAAMMGHGVRKEVIRRLQK 583
L+ + +DA + G+ +EVI R+Q+
Sbjct: 964 LLDIEIDAQLQAEGLAREVINRVQR 988
>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 129
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -3
Query: 703 LHESKDGQIEEEIHQESSRSGVSVGAADDHIILVVDYAKALLQPSYYLFP 554
LHE ++E+++ +SSR G+A+ H+ ++ + L + Y P
Sbjct: 63 LHEPVRREMEQKLASQSSRPLALGGSANFHLDILANREAVLDETDIYAAP 112
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 652 SRSGVSVGAADDHIILVVDYAKALLQPSYYLFP-NSMSHHRSINRHEDQSFNSVPTVIFY 476
+RS ++ H+ Y A+ S + N++S +SIN +D+SF+ + +
Sbjct: 231 TRSTLTFSFYPKHVFSTSHYVFAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSV 290
Query: 475 H 473
H
Sbjct: 291 H 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,844
Number of Sequences: 5004
Number of extensions: 67546
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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