Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_M14
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 122 3e-28
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 3.3
05_05_0112 - 22480639-22480905,22480991-22481287,22481707-224818... 29 4.4
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 29 5.8
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074... 29 5.8
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 29 5.8
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 28 7.6
>01_05_0752 -
24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 122 bits (294), Expect = 3e-28
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 14/174 (8%)
Frame = +2
Query: 302 MLYAWCVLAC--VTAADALRVGAGIADVTGPPAEIAFMGYAQLEQIGHGIHLRQFSRAFV 475
+L A +L C V +A VG G D+TGP A++ MGYA EQI GIH R SRAF+
Sbjct: 127 LLLALVLLNCSLVLSASPYLVGMGSFDITGPAADVNMMGYANTEQIASGIHFRLKSRAFI 186
Query: 476 IEDNSGDTVKRLVFVSVDAAMMGHGVRKEVIRRLQKR------------FGVIYNEDNVI 619
+ + +G KR+VFV++DA M V +V+ RL+ R +G +YNE+NV
Sbjct: 187 VAEPNG---KRVVFVNIDACMASQIVTIKVLERLKARNIEEPRCPHVHWYGDLYNENNVA 243
Query: 620 ISGTHTHSTPGGFLMDFLFDLPILGFVKETYIAYVLGIYXSIXIAHSRLTSARI 781
ISG HTH+ PGG+L ++ + LGFV++++ V GI SI AH+ L +I
Sbjct: 244 ISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVIVDGIEQSIVEAHNNLRPGKI 297
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 466 P*ELTQVNSMPDLLELSISHKSNFSRWASDVSYASPDTQRIRRR 335
P + SM DLL+L S ++ +S W+ ++ + SP+ + RR
Sbjct: 230 PSRIPSARSMDDLLKLDSSREA-YSSWSGNLRHRSPEKLKSARR 272
>05_05_0112 -
22480639-22480905,22480991-22481287,22481707-22481836,
22482167-22482492,22482609-22482830,22483372-22483684,
22483795-22483850
Length = 536
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 434 GHGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAMMGHGVRKEVIRRLQKR 586
G GI L Q RA+ ++D+ DTV+ V + + +G+ +++R + R
Sbjct: 406 GRGIGLGQKLRAYNLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVR 456
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 689 LGFVKETYIAYVLGIYXSIXIAHSRLTSARIK 784
L F+KE +AYV GIY I + L+S+R++
Sbjct: 161 LNFIKENEVAYVDGIY-GIKVLVDALSSSRLR 191
>06_03_0878 +
25606788-25606926,25607205-25607279,25607362-25607426,
25607504-25607606,25607712-25607762,25608271-25608424,
25608781-25608925,25609039-25609144,25609267-25609415
Length = 328
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 512 VFVSVDAAMMGHGVRKEVIRRLQKRFGVIYNEDNVIISG 628
+F S+ +M HG K + L+KR+ +E +V+ +G
Sbjct: 229 LFFSIAKKLMSHGAEKVLYLTLEKRYNFSMDELDVVANG 267
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 28.7 bits (61), Expect = 5.8
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Frame = +2
Query: 272 TRTKLRREVIMLYAWCVLACVTAADALRVGAGIADVT--GPPAE--IAFMGYAQ-LEQIG 436
T L R ++ + W V A +T A L G G + G P +A +G L +
Sbjct: 409 TMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLMATLGMTPLLAAVY 468
Query: 437 HGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAM--MGHGVRKEVIRRLQKRFGVIYNED 610
G FS++ + + D K + ++ +D M G V L K G + +
Sbjct: 469 VGAMQNIFSKS--AKYSLFDPCKEMAYIPLDEDMKVKGKAAIDVVCNPLGKSGGALIQQF 526
Query: 611 NVIISGTHTHSTP--GGFLM 664
++ G+ +STP GG L+
Sbjct: 527 MILSFGSLANSTPYLGGILL 546
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 28.3 bits (60), Expect = 7.6
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Frame = +2
Query: 272 TRTKLRREVIMLYAWCVLACVTAADALRVGAGIADVT--GPPAE--IAFMGYAQ-LEQIG 436
T L R ++ + W V A +T L G G + G P +A MG L +
Sbjct: 431 TMMLLGRIILRKFGWGVAAMITPTVLLLTGVGFFSLILFGQPLTPMLATMGMTPLLAAVY 490
Query: 437 HGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAM--MGHGVRKEVIRRLQKRFGVIYNED 610
G FS++ + + D K + ++ +D M G V L K G + +
Sbjct: 491 VGALQNIFSKS--AKYSLFDPCKEMAYIPLDEDMKVKGKAAIDVVCNPLGKSGGALIQQF 548
Query: 611 NVIISGTHTHSTP--GGFLM 664
++ G+ +STP GG L+
Sbjct: 549 MILTFGSLANSTPYLGGILL 568
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,963,705
Number of Sequences: 37544
Number of extensions: 481969
Number of successful extensions: 1428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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