Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M11
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   2.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.6  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    25   6.6  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    24   8.7  

>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 239 VAGLNEGADASGVSQVRVVAGPHDRGHQSNGHFQGIHI 126
           + G NE A  +G +   VVA     GH  +  +Q I++
Sbjct: 26  IKGFNENASTNGTTSFNVVAISSMEGHYVSKDYQPINL 63


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 153  QWAFSGHPYSVVLASRAITATIRNTIKYCLA 61
            +WA  GH  +V  A  ++  +I+  ++ C+A
Sbjct: 1180 EWAVRGHKENVEKAIASLEKSIKQVMENCIA 1210


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 245 RRLSLQRGQKMCAHF*LLKCHNDL*SFFVILLNVQI 352
           + L+ QR +++C H  ++  HND    F  LL VQ+
Sbjct: 9   KELAQQRFKEICKHAKIVDTHND----FPYLLRVQL 40


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 157 SPMGIFRASIFGSAGLESHHGDNQEHD 77
           SP  +F  S+   AG+E  H D Q H+
Sbjct: 12  SPRVLFCVSVAAVAGVEVEHVDVQPHN 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,600
Number of Sequences: 5004
Number of extensions: 23389
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)