Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M11
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   0.48 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   0.48 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   7.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 210 CVGALIQTCHCNDGLVFNADRKCVPISDC 296
           C+      C C  G + N  + CVP S C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 210 CVGALIQTCHCNDGLVFNADRKCVPISDC 296
           C+      C C  G + N  + CVP S C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 218 ADASGVSQVRVVAGPHDRGHQSNGHFQGIH 129
           A A+ V    +V+ P    HQ  G   G+H
Sbjct: 380 AVAAAVQSSSIVSSPDSARHQRIGGCNGLH 409


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 KCVPISDC*NVITIYNL 323
           KC+P S   N   IYNL
Sbjct: 113 KCLPTSGSDNCNKIYNL 129


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 KCVPISDC*NVITIYNL 323
           KC+P S   N   IYNL
Sbjct: 113 KCLPTSGSDNCNKIYNL 129


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 148 GIFRASIFGSAGLESHHGDNQEHD 77
           G FR SI  +A  +  +G+N E D
Sbjct: 209 GFFRRSITKNAVYQCKYGNNCEID 232


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 148 GIFRASIFGSAGLESHHGDNQEHD 77
           G FR SI  +A  +  +G+N E D
Sbjct: 6   GFFRRSITKNAVYQCKYGNNCEID 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,887
Number of Sequences: 438
Number of extensions: 1844
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)