Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M08
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   213   3e-56
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.28 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    28   1.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    27   3.4  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   5.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   7.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  213 bits (520), Expect = 3e-56
 Identities = 112/239 (46%), Positives = 146/239 (61%), Gaps = 3/239 (1%)
 Frame = +3

Query: 144 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 323
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 324 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 503
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124

Query: 504 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNS 677
           +Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A++  I R  QD +A++S
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISS 184

Query: 678 YKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEXEXYKXVNFEKFTKLSTVFQKENG 851
           YKR+  A   KAF  E+VPV VP  RG P  +  E E  K +N +K   +  VF K NG
Sbjct: 185 YKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKLKSVRAVF-KSNG 242


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 384 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 497
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 163 ADAITTSLRETL-VENAAIAVNICNKTLKSNKTMFLLDTS 47
           ++ I  S+R T+ +E A +A  +CN +   NK   +LDT+
Sbjct: 358 SEHIELSVRRTVGIEKALLAAALCNNSKVHNKADSILDTT 397


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 184 EPIGVLTADAITTSLRETLVENAAIAVNICNKTLKSNKTMFLL 56
           E +G+L  D +   L + +VEN    +    K L +N+T +LL
Sbjct: 295 ESLGLLVDDRV--DLAKGMVENFIFEITYYGKILNANRTYYLL 335


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 344 CNICRFAKKYHMYNCKQSMC 403
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 580 MCTTNFTWEIVLKTQQKNYKLLDKIKMNMLSIVTREV 690
           +  + + W +  KT++  YKL+    M + S+V  E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,711
Number of Sequences: 5004
Number of extensions: 64478
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)