Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_M04
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.1  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   2.1  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.3  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
 Frame = +1

Query: 271  IRTMMGYRKIXLLMLIKISYCFKNSVNL----AVNRTFQYNIYNYDTWINLQ--VXNTIE 432
            I  ++ Y +     L ++SYCFK+ V+L    +++RT Q ++ N D ++NL   V N  +
Sbjct: 3720 INDLIEYCRKKRTELPELSYCFKHLVSLQSLKSISRT-QVDLTN-DEFLNLMNFVLNLFD 3777

Query: 433  QILDFTEDSDK 465
             +L   E + K
Sbjct: 3778 SLLSSIETATK 3788


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 439 LDFTEDSDKLLGFPTRVHVTTNSTLTSDHPLFITATQQKGVSSWELPLVLQTDDYFLMLN 618
           L  + D++   GFP+  H TTN+  T  + LF+  +    +SS     +L     ++   
Sbjct: 131 LTLSSDAEYEYGFPS-TH-TTNAMATGFYSLFLLLSMSDSMSSISYYFLLSLVLLYIASI 188

Query: 619 DMGRTLC 639
            +GR  C
Sbjct: 189 SLGRIYC 195


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 625 GRTLCPHDAGSDIRRESPPXVQLTTSS 705
           GR++ P D G   R +SP  ++  T S
Sbjct: 392 GRSILPADVGCRCRGDSPDTIEFPTDS 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,073
Number of Sequences: 5004
Number of extensions: 43954
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)